PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2851-2900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | het | 93.3333 | 100.0000 | 87.5000 | 97.5831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | * | 76.9231 | 100.0000 | 62.5000 | 96.4912 | 4 | 0 | 5 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 50.0000 | 100.0000 | 33.3333 | 99.1549 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0149 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9631 | 15 | 0 | 14 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 36.3636 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.6429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9676 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9726 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9426 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | func_cds | het | 98.8372 | 100.0000 | 97.7011 | 43.1373 | 85 | 0 | 85 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6296 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3683 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2195 | 7 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6248 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.6667 | 100.0000 | 76.4706 | 60.4651 | 13 | 0 | 13 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8421 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0882 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4726 | 57 | 0 | 57 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7717 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9910 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 40.6250 | 19 | 0 | 19 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 8 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9165 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.4000 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 37.8378 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |