PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28751-28800 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7687 | 94.9675 | 98.6395 | 64.7059 | 585 | 31 | 580 | 8 | 8 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.5454 | 94.9673 | 98.1769 | 85.0222 | 1453 | 77 | 1454 | 27 | 18 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.5454 | 94.9673 | 98.1769 | 85.0222 | 1453 | 77 | 1454 | 27 | 18 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | homalt | 96.6009 | 94.9670 | 98.2921 | 70.2641 | 1151 | 61 | 1151 | 20 | 15 | 75.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3074 | 94.9664 | 99.7667 | 39.5535 | 2547 | 135 | 2566 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | * | 91.5391 | 94.9663 | 88.3507 | 90.2029 | 2113 | 112 | 2116 | 279 | 77 | 27.5986 | |
| gduggal-bwafb | INDEL | * | map_siren | het | 96.6142 | 94.9645 | 98.3223 | 79.9104 | 4281 | 227 | 4454 | 76 | 20 | 26.3158 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | * | 95.4780 | 94.9616 | 96.0000 | 76.0355 | 12119 | 643 | 12120 | 505 | 265 | 52.4752 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 83.4107 | 245 | 13 | 245 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | * | 96.4567 | 94.9612 | 98.0000 | 85.8277 | 245 | 13 | 245 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 92.8030 | 94.9612 | 90.7407 | 88.2660 | 245 | 13 | 245 | 25 | 3 | 12.0000 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 69.5898 | 94.9602 | 54.9176 | 73.3767 | 2864 | 152 | 2898 | 2379 | 40 | 1.6814 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.1163 | 94.9599 | 95.2731 | 65.4635 | 3674 | 195 | 3628 | 180 | 177 | 98.3333 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3268 | 94.9581 | 99.8166 | 57.9977 | 5443 | 289 | 5444 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | homalt | 97.4138 | 94.9580 | 100.0000 | 22.6950 | 113 | 6 | 109 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.4828 | 94.9577 | 76.0894 | 85.5630 | 2580 | 137 | 2043 | 642 | 92 | 14.3302 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | het | 96.7924 | 94.9559 | 98.7013 | 83.9181 | 753 | 40 | 760 | 10 | 1 | 10.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8466 | 94.9559 | 98.8142 | 35.1282 | 753 | 40 | 750 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1596 | 94.9559 | 99.4681 | 76.3893 | 753 | 40 | 748 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.3225 | 94.9541 | 95.6938 | 84.8606 | 414 | 22 | 400 | 18 | 4 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4117 | 94.9540 | 100.0000 | 30.3657 | 3613 | 192 | 3637 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1506 | 94.9540 | 99.4513 | 30.8218 | 3613 | 192 | 3625 | 20 | 19 | 95.0000 | |
| ckim-isaac | INDEL | * | segdup | * | 96.6725 | 94.9531 | 98.4553 | 92.8290 | 2427 | 129 | 2422 | 38 | 23 | 60.5263 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 95.0223 | 94.9527 | 95.0920 | 90.6349 | 301 | 16 | 310 | 16 | 2 | 12.5000 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | * | 96.9852 | 94.9521 | 99.1073 | 33.0128 | 8333 | 443 | 8215 | 74 | 67 | 90.5405 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.8870 | 94.9500 | 92.8476 | 48.1847 | 7972 | 424 | 15305 | 1179 | 918 | 77.8626 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 74.3243 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_siren | hetalt | 97.4093 | 94.9495 | 100.0000 | 75.7106 | 94 | 5 | 94 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 76.0101 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6171 | 94.9468 | 98.3471 | 64.1481 | 714 | 38 | 714 | 12 | 9 | 75.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9370 | 94.9441 | 99.0153 | 65.4795 | 8826 | 470 | 8849 | 88 | 83 | 94.3182 | |
| jpowers-varprowl | INDEL | * | * | het | 88.4014 | 94.9432 | 82.7031 | 60.8976 | 184316 | 9817 | 184394 | 38565 | 37886 | 98.2393 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.2190 | 94.9425 | 84.1463 | 67.3090 | 413 | 22 | 414 | 78 | 75 | 96.1538 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | * | 94.4260 | 94.9425 | 93.9150 | 88.9970 | 826 | 44 | 818 | 53 | 23 | 43.3962 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | * | 96.1407 | 94.9417 | 97.3704 | 66.4075 | 11731 | 625 | 11738 | 317 | 315 | 99.3691 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 95.4137 | 94.9416 | 95.8904 | 90.4629 | 488 | 26 | 490 | 21 | 3 | 14.2857 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | het | 92.1803 | 94.9412 | 89.5755 | 66.2595 | 807 | 43 | 5740 | 668 | 571 | 85.4790 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | * | 95.9629 | 94.9405 | 97.0075 | 49.9241 | 31675 | 1688 | 31023 | 957 | 917 | 95.8203 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | het | 96.7959 | 94.9383 | 98.7277 | 84.0114 | 769 | 41 | 776 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.7165 | 94.9376 | 96.5082 | 74.6707 | 1294 | 69 | 1299 | 47 | 37 | 78.7234 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9305 | 94.9367 | 99.0099 | 74.3003 | 300 | 16 | 300 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 94.9367 | 0.0000 | 0.0000 | 300 | 16 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.5569 | 94.9365 | 90.2936 | 47.5778 | 11887 | 634 | 11256 | 1210 | 1034 | 85.4545 | |
| dgrover-gatk | INDEL | D6_15 | * | hetalt | 97.1534 | 94.9352 | 99.4777 | 33.7944 | 7760 | 414 | 7809 | 41 | 39 | 95.1220 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | het | 97.1210 | 94.9349 | 99.4100 | 64.2688 | 2699 | 144 | 2696 | 16 | 3 | 18.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1732 | 94.9348 | 95.4128 | 68.8499 | 3861 | 206 | 3848 | 185 | 153 | 82.7027 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6046 | 94.9346 | 96.2841 | 59.3488 | 1162 | 62 | 1166 | 45 | 34 | 75.5556 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.9582 | 94.9341 | 97.0045 | 63.7624 | 3673 | 196 | 3627 | 112 | 107 | 95.5357 | |