PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28201-28250 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.7631 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.5736 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 89.6641 | 40 | 2 | 40 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.5610 | 95.2381 | 100.0000 | 99.9606 | 20 | 1 | 21 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.2607 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.8780 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9749 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6522 | 20 | 1 | 20 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.3322 | 95.2381 | 97.4518 | 62.1184 | 580 | 29 | 1415 | 37 | 32 | 86.4865 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2381 | 95.2381 | 95.2381 | 89.9522 | 40 | 2 | 40 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 93.0233 | 95.2381 | 90.9091 | 99.9650 | 20 | 1 | 20 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.3846 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.2918 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9875 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.4447 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3009 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.1507 | 40 | 2 | 40 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.7507 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.4233 | 20 | 1 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_siren | hetalt | 97.5610 | 95.2381 | 100.0000 | 90.8987 | 80 | 4 | 80 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.2482 | 95.2381 | 99.3450 | 30.3951 | 440 | 22 | 455 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.2546 | 40 | 2 | 40 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.8187 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.5056 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3788 | 40 | 2 | 40 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.9523 | 95.2381 | 92.7007 | 57.3209 | 380 | 19 | 381 | 30 | 18 | 60.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 93.0726 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7742 | 95.2381 | 98.3607 | 91.6496 | 120 | 6 | 120 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.5947 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5045 | 95.2373 | 99.8823 | 66.3421 | 5939 | 297 | 5939 | 7 | 4 | 57.1429 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3592 | 95.2372 | 99.5780 | 26.4946 | 5179 | 259 | 5191 | 22 | 22 | 100.0000 | |
| jli-custom | INDEL | D1_5 | * | hetalt | 97.3277 | 95.2367 | 99.5126 | 64.3126 | 9757 | 488 | 9801 | 48 | 46 | 95.8333 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6687 | 95.2332 | 92.1549 | 68.7890 | 45970 | 2301 | 45789 | 3898 | 3775 | 96.8445 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1871 | 95.2331 | 99.2231 | 35.3659 | 899 | 45 | 894 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4130 | 95.2329 | 99.6951 | 36.9231 | 879 | 44 | 327 | 1 | 1 | 100.0000 | |