PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28151-28200 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.0384 | 95.2632 | 92.8447 | 81.0891 | 1267 | 63 | 1064 | 82 | 76 | 92.6829 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.6023 | 95.2631 | 93.9507 | 47.7088 | 9070 | 451 | 9070 | 584 | 265 | 45.3767 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6770 | 95.2628 | 88.3513 | 55.6869 | 1468 | 73 | 6227 | 821 | 401 | 48.8429 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4729 | 95.2621 | 99.7888 | 69.4023 | 945 | 47 | 945 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.9360 | 95.2617 | 96.6200 | 68.1344 | 5569 | 277 | 5517 | 193 | 187 | 96.8912 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.9360 | 95.2617 | 96.6200 | 68.1344 | 5569 | 277 | 5517 | 193 | 187 | 96.8912 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.3600 | 95.2580 | 99.5569 | 48.5171 | 683 | 34 | 674 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4386 | 95.2569 | 97.6499 | 83.7824 | 1205 | 60 | 1205 | 29 | 20 | 68.9655 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.5072 | 95.2564 | 99.8668 | 41.1211 | 2972 | 148 | 3000 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9900 | 95.2557 | 98.7886 | 47.4309 | 13131 | 654 | 13129 | 161 | 155 | 96.2733 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2264 | 95.2551 | 99.2811 | 61.5901 | 8010 | 399 | 8010 | 58 | 49 | 84.4828 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9212 | 95.2542 | 98.6476 | 65.8841 | 2529 | 126 | 2480 | 34 | 24 | 70.5882 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | het | 97.0759 | 95.2539 | 98.9691 | 83.7521 | 863 | 43 | 864 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.7383 | 95.2537 | 98.2699 | 61.6457 | 582 | 29 | 568 | 10 | 9 | 90.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.9630 | 95.2537 | 80.0000 | 69.7438 | 582 | 29 | 548 | 137 | 132 | 96.3504 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.1916 | 95.2534 | 93.1533 | 76.2686 | 5940 | 296 | 5864 | 431 | 178 | 41.2993 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | * | 96.9275 | 95.2526 | 98.6624 | 64.9632 | 1565 | 78 | 1549 | 21 | 10 | 47.6190 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | hetalt | 97.3530 | 95.2492 | 99.5519 | 56.2316 | 10646 | 531 | 10663 | 48 | 44 | 91.6667 | |
| egarrison-hhga | INDEL | I1_5 | * | hetalt | 97.2375 | 95.2479 | 99.3119 | 61.7967 | 10663 | 532 | 10681 | 74 | 69 | 93.2432 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | * | 86.8868 | 95.2476 | 79.8754 | 91.6627 | 4770 | 238 | 4743 | 1195 | 72 | 6.0251 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | het | 95.4495 | 95.2475 | 95.6523 | 78.8806 | 28519 | 1423 | 28557 | 1298 | 664 | 51.1556 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | het | 95.4272 | 95.2464 | 95.6088 | 82.3444 | 12062 | 602 | 12062 | 554 | 169 | 30.5054 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.6075 | 95.2464 | 98.0080 | 54.6884 | 16831 | 840 | 16827 | 342 | 333 | 97.3684 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.6075 | 95.2464 | 98.0080 | 54.6884 | 16831 | 840 | 16827 | 342 | 333 | 97.3684 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.0840 | 95.2463 | 98.9940 | 50.7712 | 3326 | 166 | 3444 | 35 | 32 | 91.4286 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1666 | 95.2420 | 97.1093 | 71.1366 | 2342 | 117 | 2318 | 69 | 36 | 52.1739 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.2516 | 95.2396 | 80.4999 | 81.9090 | 2941 | 147 | 2931 | 710 | 57 | 8.0282 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.3775 | 40 | 2 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6427 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.4750 | 95.2381 | 82.6087 | 39.4737 | 20 | 1 | 19 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 96.2901 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 95.2381 | 100.0000 | 39.3939 | 20 | 1 | 20 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.2918 | 40 | 2 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.8706 | 95.2381 | 96.5116 | 64.1667 | 80 | 4 | 83 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 86.3208 | 120 | 6 | 116 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | het | 97.0778 | 95.2381 | 98.9899 | 83.8059 | 880 | 44 | 882 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | * | 88.9737 | 95.2381 | 83.4826 | 91.4946 | 840 | 42 | 839 | 166 | 31 | 18.6747 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 92.6641 | 95.2381 | 90.2256 | 92.2449 | 120 | 6 | 120 | 13 | 1 | 7.6923 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 90.4610 | 120 | 6 | 120 | 0 | 0 | ||