PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27651-27700 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | map_l250_m2_e1 | * | 93.5790 | 95.4955 | 91.7379 | 95.7583 | 318 | 15 | 322 | 29 | 3 | 10.3448 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.1232 | 95.4955 | 96.7593 | 64.9351 | 212 | 10 | 209 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6974 | 95.4955 | 97.9299 | 88.5024 | 636 | 30 | 615 | 13 | 5 | 38.4615 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6974 | 95.4955 | 97.9299 | 88.5024 | 636 | 30 | 615 | 13 | 5 | 38.4615 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9027 | 95.4955 | 96.3134 | 65.1685 | 212 | 10 | 209 | 8 | 5 | 62.5000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1574 | 95.4955 | 98.8782 | 87.2783 | 636 | 30 | 617 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1574 | 95.4955 | 98.8782 | 87.2783 | 636 | 30 | 617 | 7 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.2477 | 95.4955 | 99.0654 | 95.2018 | 106 | 5 | 106 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.9598 | 95.4921 | 90.5582 | 61.3692 | 29106 | 1374 | 59456 | 6199 | 3476 | 56.0736 | |
| ndellapenna-hhga | INDEL | I6_15 | * | * | 96.5902 | 95.4921 | 97.7138 | 48.4477 | 23704 | 1119 | 23721 | 555 | 427 | 76.9369 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.6190 | 95.4920 | 93.7617 | 82.9704 | 1737 | 82 | 1503 | 100 | 82 | 82.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2768 | 95.4919 | 99.1297 | 62.3353 | 6037 | 285 | 6037 | 53 | 43 | 81.1321 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0547 | 95.4918 | 98.6696 | 81.7778 | 466 | 22 | 445 | 6 | 1 | 16.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2668 | 95.4918 | 99.1091 | 81.8292 | 466 | 22 | 445 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | homalt | 96.2485 | 95.4897 | 97.0194 | 51.0621 | 10120 | 478 | 10058 | 309 | 250 | 80.9061 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6301 | 95.4887 | 95.7720 | 73.1847 | 2032 | 96 | 2016 | 89 | 78 | 87.6404 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4885 | 0.0000 | 0.0000 | 6519 | 308 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5098 | 95.4885 | 99.6185 | 24.8854 | 6519 | 308 | 6528 | 25 | 24 | 96.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8266 | 95.4876 | 98.2036 | 81.6484 | 656 | 31 | 656 | 12 | 10 | 83.3333 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.7383 | 95.4861 | 98.0237 | 80.6575 | 275 | 13 | 248 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2177 | 95.4861 | 96.9605 | 77.6949 | 275 | 13 | 319 | 10 | 8 | 80.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.6898 | 95.4839 | 100.0000 | 83.3147 | 148 | 7 | 149 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.8400 | 95.4839 | 98.2353 | 80.5714 | 148 | 7 | 167 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | * | 97.0470 | 95.4839 | 98.6622 | 88.2791 | 296 | 14 | 295 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.3706 | 95.4839 | 99.3333 | 79.5640 | 148 | 7 | 149 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.6898 | 95.4839 | 100.0000 | 82.1557 | 148 | 7 | 149 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0535 | 95.4837 | 98.6758 | 53.2615 | 3721 | 176 | 3726 | 50 | 39 | 78.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1160 | 95.4815 | 98.8074 | 51.9618 | 5473 | 259 | 5468 | 66 | 42 | 63.6364 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.9438 | 95.4802 | 94.4134 | 70.5107 | 169 | 8 | 169 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.2687 | 95.4802 | 99.1254 | 71.1036 | 338 | 16 | 340 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8020 | 95.4802 | 92.1818 | 92.5766 | 507 | 24 | 507 | 43 | 11 | 25.5814 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | * | 96.7557 | 95.4802 | 98.0658 | 89.8148 | 507 | 24 | 507 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | * | 96.5736 | 95.4802 | 97.6923 | 93.3153 | 507 | 24 | 508 | 12 | 2 | 16.6667 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | het | 94.8319 | 95.4783 | 94.1941 | 83.6101 | 4202 | 199 | 4202 | 259 | 65 | 25.0965 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | * | 97.3361 | 95.4779 | 99.2680 | 80.2721 | 3526 | 167 | 3526 | 26 | 7 | 26.9231 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.8876 | 95.4769 | 78.0488 | 76.6109 | 5826 | 276 | 5856 | 1647 | 1442 | 87.5531 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 42.8172 | 612 | 29 | 613 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 43.1608 | 612 | 29 | 615 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 40.5222 | 612 | 29 | 615 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.9582 | 95.4751 | 83.2740 | 92.7259 | 211 | 10 | 234 | 47 | 4 | 8.5106 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.4632 | 95.4749 | 99.5360 | 33.1882 | 10001 | 474 | 10083 | 47 | 46 | 97.8723 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.0244 | 95.4725 | 96.5827 | 67.7509 | 36186 | 1716 | 36120 | 1278 | 1242 | 97.1831 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0438 | 95.4693 | 98.6711 | 90.0496 | 295 | 14 | 297 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6708 | 95.4660 | 99.9798 | 58.6016 | 14718 | 699 | 14835 | 3 | 2 | 66.6667 | |