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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 539 540 541 542 543 544 545 546 547 ... 1720 1721 » 27101-27150 / 86044 show all
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.2804	95.7563	96.8102	77.5473	41496	1839	41428	1365	1297	95.0183
cchapple-custom	SNP	ti	map_l250_m2_e1	het	95.5838	95.7563	95.4120	91.7154	3159	140	3161	152	41	26.9737
jli-custom	INDEL	D16_PLUS	HG002complexvar	het	97.1408	95.7543	98.5680	65.7400	1060	47	826	12	6	50.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.6012	95.7537	99.5214	52.8600	902	40	3535	17	15	88.2353
gduggal-bwaplat	SNP	tv	HG002complexvar	homalt	97.7875	95.7534	99.9100	24.5806	91072	4039	90999	82	77	93.9024
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.1176	95.7529	92.5373	60.1190	248	11	248	20	17	85.0000
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	het	96.1240	95.7529	96.4981	85.9049	744	33	744	27	3	11.1111
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.4479	95.7527	89.3636	86.9652	4058	180	4016	478	89	18.6192
mlin-fermikit	INDEL	D1_5	HG002complexvar	het	96.8827	95.7525	98.0399	50.2469	19883	882	19757	395	351	88.8608
ckim-vqsr	INDEL	*	map_l100_m2_e0	het	96.2758	95.7521	96.8053	90.9383	2209	98	2212	73	11	15.0685
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8168	95.7514	99.9731	60.5697	14762	655	14877	4	3	75.0000
eyeh-varpipe	INDEL	*	map_l100_m1_e0	het	96.1706	95.7494	96.5955	81.6758	2140	95	2894	102	68	66.6667
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	54.4494	95.7490	38.0411	54.7898	4257	189	4280	6971	6935	99.4836
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.5795	95.7485	99.4819	26.9554	6869	305	6912	36	34	94.4444
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.1165	95.7477	98.5251	68.8562	5359	238	5344	80	71	88.7500
ghariani-varprowl	INDEL	I1_5	HG002complexvar	homalt	95.8338	95.7466	95.9213	42.3182	12876	572	12817	545	363	66.6055
cchapple-custom	SNP	*	map_l250_m2_e0	het	95.2059	95.7451	94.6728	91.6166	4973	221	4976	280	64	22.8571
ckim-dragen	INDEL	I16_PLUS	HG002compoundhet	het	95.7890	95.7447	95.8333	94.6309	45	2	23	1	1	100.0000
ckim-dragen	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	80.7087	45	2	47	2	0	0.0000
cchapple-custom	INDEL	D6_15	map_l125_m0_e0	*	94.9817	95.7447	94.2308	91.3621	45	2	49	3	1	33.3333
ckim-gatk	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.8017	45	2	23	7	7	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	80.0813	45	2	47	2	2	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	79.5833	45	2	47	2	2	100.0000
jlack-gatk	INDEL	D6_15	map_l125_m0_e0	*	90.0000	95.7447	84.9057	94.0382	45	2	45	8	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	80.1619	45	2	47	2	2	100.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	94.8643	95.7447	94.0000	79.3388	45	2	47	3	1	33.3333
jlack-gatk	INDEL	I16_PLUS	segdup	*	96.7742	95.7447	97.8261	96.5388	45	2	45	1	0	0.0000
rpoplin-dv42	INDEL	D1_5	map_l100_m1_e0	hetalt	97.8261	95.7447	100.0000	92.0635	45	2	45	0	0
mlin-fermikit	INDEL	I16_PLUS	segdup	*	96.8185	95.7447	97.9167	93.8931	45	2	47	1	1	100.0000
mlin-fermikit	INDEL	I6_15	segdup	homalt	96.7505	95.7447	97.7778	90.9820	45	2	44	1	1	100.0000
ndellapenna-hhga	INDEL	D6_15	map_l150_m2_e1	het	95.9849	95.7447	96.2264	91.7317	45	2	51	2	1	50.0000
raldana-dualsentieon	INDEL	D6_15	map_l125_m0_e0	*	97.8261	95.7447	100.0000	91.1417	45	2	45	0	0
raldana-dualsentieon	INDEL	D6_15	map_l150_m2_e1	het	97.8261	95.7447	100.0000	91.0180	45	2	45	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	96.8185	95.7447	97.9167	79.0393	45	2	47	1	1	100.0000
raldana-dualsentieon	INDEL	I6_15	segdup	homalt	97.8261	95.7447	100.0000	91.8330	45	2	45	0	0
rpoplin-dv42	INDEL	I6_15	segdup	homalt	97.8261	95.7447	100.0000	90.7025	45	2	45	0	0
qzeng-custom	INDEL	I6_15	segdup	homalt	91.5760	95.7447	87.7551	90.9926	45	2	43	6	2	33.3333
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.8017	45	2	23	7	7	100.0000
egarrison-hhga	INDEL	I16_PLUS	segdup	*	95.7890	95.7447	95.8333	93.4426	45	2	46	2	1	50.0000
egarrison-hhga	INDEL	I6_15	segdup	homalt	97.8261	95.7447	100.0000	91.4773	45	2	45	0	0
dgrover-gatk	INDEL	D6_15	map_l125_m0_e0	*	97.8261	95.7447	100.0000	94.1634	45	2	45	0	0
dgrover-gatk	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.8650	45	2	23	7	7	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	HG002compoundhet	het	83.6026	95.7447	74.1935	93.6735	45	2	23	8	8	100.0000
astatham-gatk	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.7759	45	2	23	7	7	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.9391	95.7447	88.4244	72.2445	585	26	550	72	67	93.0556
asubramanian-gatk	INDEL	D6_15	map_l150_m2_e1	het	96.7742	95.7447	97.8261	95.1426	45	2	45	1	0	0.0000
ltrigg-rtg2	INDEL	D6_15	map_l125_m0_e0	*	97.8261	95.7447	100.0000	89.1827	45	2	45	0	0
ltrigg-rtg2	INDEL	I6_15	segdup	homalt	97.8261	95.7447	100.0000	89.1304	45	2	45	0	0
ltrigg-rtg1	INDEL	I6_15	segdup	homalt	97.8261	95.7447	100.0000	89.8649	45	2	45	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.5228	95.7439	99.3691	35.4149	7716	343	7718	49	49	100.0000

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