PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27001-27050 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.6090 | 95.7958 | 99.4921 | 26.3939 | 6813 | 299 | 6856 | 35 | 34 | 97.1429 | |
| mlin-fermikit | INDEL | D1_5 | * | * | 96.7247 | 95.7954 | 97.6723 | 56.1904 | 140575 | 6170 | 140399 | 3346 | 3212 | 95.9952 | |
| cchapple-custom | SNP | tv | map_l250_m1_e0 | homalt | 97.8520 | 95.7944 | 100.0000 | 84.1085 | 820 | 36 | 820 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.3454 | 95.7944 | 92.9397 | 77.9289 | 1435 | 63 | 1448 | 110 | 87 | 79.0909 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | het | 96.2709 | 95.7942 | 96.7524 | 90.3659 | 2141 | 94 | 2145 | 72 | 11 | 15.2778 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5532 | 95.7934 | 99.3789 | 69.8925 | 1298 | 57 | 1280 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | het | 96.2707 | 95.7929 | 96.7532 | 88.9129 | 296 | 13 | 298 | 10 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.1948 | 95.7925 | 94.6045 | 46.7027 | 8014 | 352 | 8013 | 457 | 181 | 39.6061 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| jli-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 97.6428 | 95.7919 | 99.5667 | 24.6880 | 7808 | 343 | 7812 | 34 | 33 | 97.0588 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | hetalt | 97.5461 | 95.7915 | 99.3661 | 40.2288 | 7830 | 344 | 7838 | 50 | 50 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6197 | 95.7908 | 99.5198 | 33.5726 | 751 | 33 | 829 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | * | 96.0890 | 95.7906 | 96.3892 | 89.6069 | 6918 | 304 | 6914 | 259 | 62 | 23.9382 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | het | 95.5856 | 95.7898 | 95.3823 | 91.6456 | 3117 | 137 | 3119 | 151 | 40 | 26.4901 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | het | 93.5733 | 95.7895 | 91.4573 | 96.4356 | 182 | 8 | 182 | 17 | 2 | 11.7647 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | het | 90.5473 | 95.7895 | 85.8491 | 97.7177 | 182 | 8 | 182 | 30 | 2 | 6.6667 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | het | 85.8491 | 95.7895 | 77.7778 | 97.3448 | 182 | 8 | 182 | 52 | 1 | 1.9231 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | het | 95.2880 | 95.7895 | 94.7917 | 96.7022 | 182 | 8 | 182 | 10 | 1 | 10.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | het | 97.0873 | 95.7892 | 98.4210 | 25.5027 | 144384 | 6347 | 144674 | 2321 | 283 | 12.1930 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 95.7878 | 0.0000 | 0.0000 | 614 | 27 | 0 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8486 | 95.7878 | 100.0000 | 40.6160 | 614 | 27 | 617 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6327 | 95.7867 | 99.5512 | 56.7594 | 2569 | 113 | 2662 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | * | 97.7647 | 95.7862 | 99.8267 | 65.0696 | 11525 | 507 | 11521 | 20 | 4 | 20.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | hetalt | 97.7751 | 95.7840 | 99.8506 | 73.3373 | 1295 | 57 | 1337 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_siren | het | 97.1940 | 95.7839 | 98.6462 | 82.2862 | 2181 | 96 | 2186 | 30 | 2 | 6.6667 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | * | 96.6517 | 95.7826 | 97.5368 | 66.6083 | 11719 | 516 | 11721 | 296 | 293 | 98.9865 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 94.3765 | 95.7816 | 93.0120 | 85.5736 | 1158 | 51 | 1158 | 87 | 61 | 70.1149 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2345 | 95.7792 | 96.6942 | 67.4731 | 590 | 26 | 585 | 20 | 16 | 80.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6820 | 95.7792 | 99.6619 | 56.9975 | 1180 | 52 | 1179 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3240 | 95.7792 | 96.8750 | 60.5835 | 1180 | 52 | 1178 | 38 | 26 | 68.4211 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | het | 95.1102 | 95.7792 | 94.4504 | 92.0262 | 885 | 39 | 885 | 52 | 6 | 11.5385 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.1487 | 95.7792 | 96.5210 | 75.6177 | 4788 | 211 | 4772 | 172 | 130 | 75.5814 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.1487 | 95.7792 | 96.5210 | 75.6177 | 4788 | 211 | 4772 | 172 | 130 | 75.5814 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | het | 96.6423 | 95.7777 | 97.5227 | 51.7717 | 17421 | 768 | 17282 | 439 | 429 | 97.7221 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3551 | 95.7767 | 98.9864 | 63.1106 | 6055 | 267 | 6055 | 62 | 49 | 79.0323 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3551 | 95.7767 | 98.9864 | 63.1106 | 6055 | 267 | 6055 | 62 | 49 | 79.0323 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | * | 96.9083 | 95.7760 | 98.0676 | 85.9889 | 2018 | 89 | 2030 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | * | 96.8910 | 95.7753 | 98.0329 | 87.0344 | 2131 | 94 | 2143 | 43 | 9 | 20.9302 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | het | 92.9271 | 95.7746 | 90.2439 | 86.9634 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |