PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26651-26700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7907 | 95.9438 | 99.7101 | 42.8335 | 615 | 26 | 688 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.4384 | 95.9432 | 96.9388 | 58.1197 | 473 | 20 | 475 | 15 | 12 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.2409 | 95.9430 | 86.9781 | 77.5847 | 875 | 37 | 875 | 131 | 121 | 92.3664 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8414 | 95.9429 | 99.8165 | 68.2488 | 5983 | 253 | 5983 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.3547 | 95.9420 | 98.8095 | 83.7916 | 331 | 14 | 332 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | homalt | 97.8156 | 95.9417 | 99.7641 | 75.2443 | 10993 | 465 | 10994 | 26 | 14 | 53.8462 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | * | 96.1788 | 95.9417 | 96.4172 | 90.1898 | 7565 | 320 | 7562 | 281 | 65 | 23.1317 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1952 | 95.9411 | 98.4824 | 66.8225 | 1891 | 80 | 1817 | 28 | 10 | 35.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1952 | 95.9411 | 98.4824 | 66.8225 | 1891 | 80 | 1817 | 28 | 10 | 35.7143 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2208 | 95.9411 | 98.5350 | 66.0589 | 1891 | 80 | 1816 | 27 | 9 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2208 | 95.9411 | 98.5350 | 66.0589 | 1891 | 80 | 1816 | 27 | 9 | 33.3333 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2925 | 95.9395 | 98.6842 | 76.0063 | 1205 | 51 | 1200 | 16 | 7 | 43.7500 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5116 | 95.9391 | 93.1260 | 81.3150 | 567 | 24 | 569 | 42 | 5 | 11.9048 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | * | 97.5434 | 95.9362 | 99.2054 | 30.5780 | 8664 | 367 | 8615 | 69 | 63 | 91.3043 | |
| ckim-isaac | INDEL | * | * | het | 96.5214 | 95.9358 | 97.1142 | 48.5384 | 186243 | 7890 | 184953 | 5496 | 3918 | 71.2882 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5789 | 95.9353 | 99.2797 | 63.8316 | 5098 | 216 | 5100 | 37 | 30 | 81.0811 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | het | 88.4674 | 95.9350 | 82.0784 | 59.1925 | 1062 | 45 | 1319 | 288 | 45 | 15.6250 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | * | 96.1831 | 95.9309 | 96.4367 | 90.2654 | 7662 | 325 | 7659 | 283 | 66 | 23.3216 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | het | 96.5732 | 95.9308 | 97.2242 | 76.0435 | 13414 | 569 | 13415 | 383 | 137 | 35.7702 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.6517 | 95.9297 | 99.4366 | 32.4551 | 6882 | 292 | 6883 | 39 | 39 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9721 | 95.9293 | 94.0338 | 60.7675 | 13197 | 560 | 21640 | 1373 | 1000 | 72.8332 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.9721 | 95.9293 | 94.0338 | 60.7675 | 13197 | 560 | 21640 | 1373 | 1000 | 72.8332 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.3636 | 95.9276 | 96.8037 | 90.7789 | 212 | 9 | 212 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | * | 97.7384 | 95.9269 | 99.6196 | 78.1861 | 1837 | 78 | 1833 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | het | 96.2825 | 95.9259 | 96.6418 | 87.1729 | 777 | 33 | 777 | 27 | 3 | 11.1111 | |
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | homalt | 97.8107 | 95.9258 | 99.7712 | 66.1153 | 10595 | 450 | 10464 | 24 | 19 | 79.1667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | * | 96.0476 | 95.9257 | 96.1698 | 84.5601 | 1860 | 79 | 1858 | 74 | 14 | 18.9189 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 97.1296 | 95.9257 | 98.3641 | 85.3950 | 1860 | 79 | 1864 | 31 | 6 | 19.3548 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7103 | 95.9230 | 99.5655 | 64.4709 | 8917 | 379 | 8936 | 39 | 38 | 97.4359 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.6454 | 95.9224 | 99.4314 | 31.5401 | 6822 | 290 | 6820 | 39 | 39 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.1650 | 95.9220 | 96.4093 | 67.7662 | 541 | 23 | 537 | 20 | 9 | 45.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2543 | 95.9220 | 96.5889 | 67.3888 | 541 | 23 | 538 | 19 | 9 | 47.3684 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0443 | 95.9215 | 98.1938 | 78.8174 | 635 | 27 | 598 | 11 | 7 | 63.6364 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | het | 96.2073 | 95.9191 | 96.4972 | 82.5948 | 19532 | 831 | 19532 | 709 | 207 | 29.1961 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4217 | 95.9190 | 98.9723 | 59.1578 | 6064 | 258 | 6067 | 63 | 48 | 76.1905 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | het | 94.9495 | 95.9184 | 94.0000 | 89.6694 | 47 | 2 | 47 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | het | 94.0000 | 95.9184 | 92.1569 | 90.3774 | 47 | 2 | 47 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | het | 95.9184 | 95.9184 | 95.9184 | 92.9900 | 47 | 2 | 47 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | homalt | 33.7522 | 95.9184 | 20.4793 | 75.1027 | 658 | 28 | 658 | 2555 | 2524 | 98.7867 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | homalt | 97.7543 | 95.9184 | 99.6620 | 74.9969 | 16215 | 690 | 16216 | 55 | 21 | 38.1818 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | * | 94.9271 | 95.9184 | 93.9560 | 89.0203 | 846 | 36 | 855 | 55 | 11 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6812 | 95.9164 | 99.5121 | 62.7887 | 5097 | 217 | 5099 | 25 | 19 | 76.0000 | |