PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25651-25700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1776 | 96.3907 | 97.9775 | 74.4326 | 908 | 34 | 872 | 18 | 13 | 72.2222 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.1577 | 96.3875 | 81.2227 | 77.7237 | 587 | 22 | 558 | 129 | 127 | 98.4496 | |
| qzeng-custom | INDEL | I6_15 | segdup | het | 91.8575 | 96.3855 | 87.7358 | 93.5009 | 80 | 3 | 93 | 13 | 2 | 15.3846 | |
| astatham-gatk | INDEL | I6_15 | segdup | het | 97.5610 | 96.3855 | 98.7654 | 93.9052 | 80 | 3 | 80 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | * | homalt | 98.1562 | 96.3855 | 99.9931 | 16.5795 | 363492 | 13631 | 363515 | 25 | 18 | 72.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | * | 97.3838 | 96.3855 | 98.4029 | 90.0233 | 800 | 30 | 801 | 13 | 2 | 15.3846 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 96.8251 | 96.3827 | 97.2716 | 86.3349 | 826 | 31 | 820 | 23 | 6 | 26.0870 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | * | 96.7213 | 96.3827 | 97.0623 | 87.8080 | 826 | 31 | 826 | 25 | 6 | 24.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | * | 97.4066 | 96.3827 | 98.4524 | 90.8257 | 826 | 31 | 827 | 13 | 2 | 15.3846 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | * | 97.9546 | 96.3824 | 99.5789 | 69.3400 | 4023 | 151 | 4020 | 17 | 4 | 23.5294 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | het | 98.0426 | 96.3815 | 99.7620 | 61.0832 | 7964 | 299 | 7964 | 19 | 3 | 15.7895 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.7064 | 96.3801 | 99.0698 | 91.1194 | 213 | 8 | 213 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9362 | 96.3801 | 99.5434 | 90.9728 | 213 | 8 | 218 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.7064 | 96.3801 | 99.0698 | 91.1230 | 213 | 8 | 213 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | * | 97.1394 | 96.3787 | 97.9123 | 57.5494 | 5110 | 192 | 5112 | 109 | 99 | 90.8257 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | het | 94.7170 | 96.3778 | 93.1124 | 88.4024 | 1357 | 51 | 1433 | 106 | 19 | 17.9245 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0803 | 96.3768 | 97.7941 | 91.0703 | 266 | 10 | 266 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4250 | 96.3768 | 98.4962 | 90.6073 | 266 | 10 | 262 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7880 | 96.3753 | 97.2043 | 81.1588 | 452 | 17 | 452 | 13 | 13 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9854 | 96.3753 | 91.7112 | 76.9278 | 452 | 17 | 343 | 31 | 12 | 38.7097 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.9415 | 96.3753 | 99.5595 | 86.6901 | 452 | 17 | 452 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | * | 96.5204 | 96.3746 | 96.6667 | 95.5291 | 319 | 12 | 319 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | het | 96.8336 | 96.3743 | 97.2973 | 87.9068 | 824 | 31 | 828 | 23 | 2 | 8.6957 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8071 | 96.3738 | 99.2837 | 81.2818 | 691 | 26 | 693 | 5 | 1 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 96.6476 | 96.3738 | 96.9231 | 89.6121 | 691 | 26 | 693 | 22 | 4 | 18.1818 | |
| mlin-fermikit | INDEL | D1_5 | segdup | * | 97.1654 | 96.3735 | 97.9705 | 92.4302 | 1063 | 40 | 1062 | 22 | 19 | 86.3636 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | * | 96.4309 | 96.3734 | 96.4883 | 71.4997 | 31650 | 1191 | 31653 | 1152 | 513 | 44.5312 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.3822 | 96.3731 | 98.4127 | 91.0490 | 372 | 14 | 372 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | het | 95.6362 | 96.3722 | 94.9113 | 82.2863 | 1222 | 46 | 1231 | 66 | 8 | 12.1212 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4229 | 96.3710 | 98.4980 | 52.1860 | 30831 | 1161 | 30755 | 469 | 455 | 97.0149 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7471 | 96.3710 | 99.1632 | 86.0885 | 239 | 9 | 237 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8607 | 96.3706 | 99.3977 | 55.2797 | 15188 | 572 | 15184 | 92 | 32 | 34.7826 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | homalt | 98.0484 | 96.3703 | 99.7860 | 62.8472 | 26524 | 999 | 26107 | 56 | 43 | 76.7857 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | het | 96.6905 | 96.3687 | 97.0145 | 77.6907 | 27361 | 1031 | 27361 | 842 | 242 | 28.7411 | |
| mlin-fermikit | SNP | tv | segdup | het | 97.5120 | 96.3685 | 98.6829 | 87.0738 | 5095 | 192 | 5095 | 68 | 1 | 1.4706 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0155 | 96.3678 | 99.7204 | 49.6879 | 30830 | 1162 | 31028 | 87 | 75 | 86.2069 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.1490 | 96.3652 | 100.0000 | 55.8357 | 1087 | 41 | 1086 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1481 | 96.3636 | 100.0000 | 63.2653 | 53 | 2 | 54 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9512 | 96.3636 | 97.5460 | 90.9595 | 159 | 6 | 159 | 4 | 2 | 50.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 91.0017 | 106 | 4 | 106 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9633 | 106 | 4 | 106 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9091 | 106 | 4 | 106 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0673 | 96.3636 | 93.8053 | 89.8473 | 106 | 4 | 106 | 7 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||