PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25501-25550 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.4770 | 96.4561 | 94.5176 | 45.8743 | 6505 | 239 | 6603 | 383 | 170 | 44.3864 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2050 | 96.4561 | 97.9656 | 65.7923 | 626 | 23 | 626 | 13 | 12 | 92.3077 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | homalt | 98.1670 | 96.4551 | 99.9407 | 84.8332 | 1687 | 62 | 1686 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8855 | 96.4539 | 99.3601 | 62.1846 | 1088 | 40 | 1087 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | het | 96.7249 | 96.4527 | 96.9986 | 79.0213 | 28278 | 1040 | 28278 | 875 | 244 | 27.8857 | |
| cchapple-custom | INDEL | * | map_l100_m2_e0 | * | 95.9812 | 96.4527 | 95.5142 | 84.7037 | 3562 | 131 | 3641 | 171 | 49 | 28.6550 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6558 | 96.4524 | 98.8896 | 58.1164 | 4622 | 170 | 4631 | 52 | 44 | 84.6154 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.9633 | 96.4517 | 99.5230 | 36.1107 | 7883 | 290 | 7929 | 38 | 38 | 100.0000 | |
| jmaeng-gatk | SNP | * | HG002complexvar | hetalt | 97.8723 | 96.4516 | 99.3355 | 40.5138 | 299 | 11 | 299 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | tv | HG002complexvar | hetalt | 97.8723 | 96.4516 | 99.3355 | 40.5138 | 299 | 11 | 299 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 95.0715 | 96.4516 | 93.7304 | 91.7974 | 299 | 11 | 299 | 20 | 6 | 30.0000 | |
| ckim-gatk | SNP | * | HG002complexvar | hetalt | 98.0328 | 96.4516 | 99.6667 | 39.8798 | 299 | 11 | 299 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | HG002complexvar | hetalt | 98.0328 | 96.4516 | 99.6667 | 39.8798 | 299 | 11 | 299 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.9829 | 96.4509 | 99.5644 | 27.1624 | 5245 | 193 | 5257 | 23 | 22 | 95.6522 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | homalt | 98.0991 | 96.4505 | 99.8050 | 66.5043 | 5652 | 208 | 5629 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8288 | 96.4491 | 97.2114 | 54.8569 | 14260 | 525 | 14258 | 409 | 404 | 98.7775 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | het | 95.7012 | 96.4489 | 94.9650 | 90.2767 | 1358 | 50 | 1358 | 72 | 8 | 11.1111 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | * | 96.3093 | 96.4489 | 96.1702 | 91.3225 | 1358 | 50 | 1356 | 54 | 9 | 16.6667 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.8256 | 96.4486 | 99.2424 | 73.9001 | 516 | 19 | 524 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.0110 | 96.4467 | 80.9322 | 61.2479 | 190 | 7 | 191 | 45 | 38 | 84.4444 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.6376 | 96.4467 | 94.8419 | 58.7509 | 1140 | 42 | 1140 | 62 | 60 | 96.7742 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9433 | 96.4451 | 99.4887 | 36.9705 | 1248 | 46 | 1362 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | het | 96.3069 | 96.4448 | 96.1694 | 78.7859 | 9766 | 360 | 9766 | 389 | 92 | 23.6504 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | homalt | 98.1620 | 96.4447 | 99.9415 | 84.8962 | 1709 | 63 | 1708 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1795 | 96.4441 | 99.9786 | 67.5115 | 4665 | 172 | 4665 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | het | 95.6711 | 96.4433 | 94.9111 | 81.1539 | 1166 | 43 | 1175 | 63 | 7 | 11.1111 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.5434 | 96.4420 | 78.4876 | 62.7159 | 5638 | 208 | 6217 | 1704 | 1642 | 96.3615 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.5434 | 96.4420 | 78.4876 | 62.7159 | 5638 | 208 | 6217 | 1704 | 1642 | 96.3615 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | homalt | 98.1821 | 96.4417 | 99.9864 | 68.7543 | 7345 | 271 | 7343 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | * | 96.8785 | 96.4404 | 97.3206 | 91.1117 | 2032 | 75 | 2034 | 56 | 8 | 14.2857 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0221 | 96.4380 | 99.6592 | 65.6762 | 1462 | 54 | 1462 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0879 | 96.4380 | 99.7952 | 66.9971 | 1462 | 54 | 1462 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.0412 | 96.4378 | 99.6987 | 66.1107 | 2978 | 110 | 2978 | 9 | 7 | 77.7778 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | het | 96.9708 | 96.4374 | 97.5102 | 78.4083 | 18407 | 680 | 18407 | 470 | 150 | 31.9149 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 96.8730 | 96.4368 | 97.3131 | 86.4514 | 839 | 31 | 833 | 23 | 6 | 26.0870 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | * | 96.7147 | 96.4368 | 96.9942 | 87.9173 | 839 | 31 | 839 | 26 | 6 | 23.0769 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3339 | 96.4347 | 96.2334 | 71.2425 | 3922 | 145 | 3909 | 153 | 129 | 84.3137 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | het | 93.6224 | 96.4339 | 90.9701 | 78.1195 | 29530 | 1092 | 29276 | 2906 | 248 | 8.5341 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.1461 | 96.4333 | 91.9648 | 90.4466 | 1460 | 54 | 1568 | 137 | 36 | 26.2774 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9782 | 96.4324 | 99.5745 | 60.1289 | 8109 | 300 | 8190 | 35 | 13 | 37.1429 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | * | 95.9700 | 96.4324 | 95.5120 | 84.7746 | 3622 | 134 | 3703 | 174 | 52 | 29.8851 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3114 | 96.4304 | 98.2086 | 62.1384 | 1864 | 69 | 1864 | 34 | 34 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.5263 | 27 | 1 | 27 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_siren | het | 96.0854 | 96.4286 | 95.7447 | 85.9911 | 270 | 10 | 270 | 12 | 5 | 41.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | het | 97.4729 | 96.4286 | 98.5401 | 83.9390 | 270 | 10 | 270 | 4 | 1 | 25.0000 | |