PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25201-25250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.8387 | 28 | 1 | 28 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5517 | 96.5517 | 96.5517 | 80.4494 | 84 | 3 | 84 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 43.3962 | 28 | 1 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 95.7044 | 96.5517 | 94.8718 | 91.7021 | 28 | 1 | 37 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | segdup | * | 91.0569 | 96.5517 | 86.1538 | 96.9253 | 56 | 2 | 56 | 9 | 2 | 22.2222 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 95.5840 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9697 | 96.5517 | 97.3913 | 88.8023 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9697 | 96.5517 | 97.3913 | 89.0580 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.1047 | 96.5517 | 66.9981 | 74.4486 | 3136 | 112 | 3167 | 1560 | 81 | 5.1923 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | het | 93.3333 | 96.5517 | 90.3226 | 59.2105 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | * | 97.5594 | 96.5517 | 98.5882 | 86.5761 | 840 | 30 | 838 | 12 | 2 | 16.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | het | 95.2276 | 96.5517 | 93.9394 | 90.5714 | 28 | 1 | 31 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 91.5916 | 28 | 1 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.2766 | 96.5517 | 84.7674 | 66.2145 | 588 | 21 | 1330 | 239 | 80 | 33.4728 | |
| rpoplin-dv42 | INDEL | D6_15 | func_cds | het | 94.9153 | 96.5517 | 93.3333 | 53.1250 | 28 | 1 | 28 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | het | 96.5517 | 96.5517 | 96.5517 | 93.2715 | 28 | 1 | 28 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.3114 | 28 | 1 | 28 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | het | 95.3191 | 96.5517 | 94.1176 | 92.2018 | 28 | 1 | 32 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 89.3382 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 36.3636 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | segdup | * | 90.3226 | 96.5517 | 84.8485 | 96.3435 | 56 | 2 | 56 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6768 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6296 | 28 | 1 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.3287 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6257 | 28 | 1 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6679 | 28 | 1 | 28 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 96.8893 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | SNP | ti | map_l100_m1_e0 | hetalt | 98.2456 | 96.5517 | 100.0000 | 68.8889 | 28 | 1 | 28 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.0984 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 90.8497 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.3874 | 28 | 1 | 28 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | HG002compoundhet | het | 98.0271 | 96.5510 | 99.5491 | 42.9549 | 13689 | 489 | 13687 | 62 | 36 | 58.0645 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.9208 | 96.5506 | 97.2938 | 53.6376 | 14275 | 510 | 14273 | 397 | 386 | 97.2292 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.1553 | 96.5499 | 82.8127 | 57.5437 | 5485 | 196 | 5488 | 1139 | 1055 | 92.6251 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | * | 93.7321 | 96.5489 | 91.0750 | 79.3697 | 45573 | 1629 | 44971 | 4407 | 338 | 7.6696 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7812 | 96.5482 | 99.0462 | 60.2645 | 15216 | 544 | 15057 | 145 | 123 | 84.8276 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.6003 | 96.5481 | 90.8273 | 56.5817 | 3636 | 130 | 3634 | 367 | 158 | 43.0518 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.6003 | 96.5481 | 90.8273 | 56.5817 | 3636 | 130 | 3634 | 367 | 158 | 43.0518 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | het | 98.1544 | 96.5480 | 99.8151 | 61.4966 | 19438 | 695 | 19439 | 36 | 2 | 5.5556 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7464 | 96.5472 | 98.9758 | 64.1922 | 13282 | 475 | 13239 | 137 | 125 | 91.2409 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7464 | 96.5472 | 98.9758 | 64.1922 | 13282 | 475 | 13239 | 137 | 125 | 91.2409 | |
| gduggal-snapvard | SNP | * | map_siren | het | 95.1967 | 96.5469 | 93.8838 | 69.6200 | 87849 | 3142 | 86743 | 5651 | 524 | 9.2727 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3238 | 96.5464 | 96.1023 | 63.4311 | 27284 | 976 | 27270 | 1106 | 763 | 68.9873 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | het | 96.7209 | 96.5464 | 96.8960 | 89.9730 | 1873 | 67 | 1873 | 60 | 11 | 18.3333 | |