PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24851-24900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.6667 | 96.6667 | 96.6667 | 88.9908 | 58 | 2 | 58 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.2517 | 58 | 2 | 58 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.3961 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 81.6456 | 58 | 2 | 58 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 82.3708 | 58 | 2 | 58 | 0 | 0 | ||
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | het | 96.2085 | 96.6667 | 95.7547 | 95.7137 | 203 | 7 | 203 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9497 | 96.6667 | 93.2927 | 74.5736 | 319 | 11 | 306 | 22 | 18 | 81.8182 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 87.2180 | 96.6667 | 79.4521 | 92.0131 | 58 | 2 | 58 | 15 | 2 | 13.3333 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | het | 97.8071 | 96.6657 | 98.9758 | 87.5900 | 3189 | 110 | 3189 | 33 | 16 | 48.4848 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.3631 | 96.6654 | 98.0710 | 80.0739 | 19828 | 684 | 19828 | 390 | 140 | 35.8974 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.3029 | 96.6649 | 86.5044 | 61.6244 | 11101 | 383 | 11089 | 1730 | 1680 | 97.1098 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | * | 98.0684 | 96.6630 | 99.5153 | 86.9145 | 6981 | 241 | 6981 | 34 | 19 | 55.8824 | |
| mlin-fermikit | SNP | * | segdup | het | 97.6489 | 96.6622 | 98.6560 | 85.6660 | 16739 | 578 | 16736 | 228 | 1 | 0.4386 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | het | 97.5069 | 96.6621 | 98.3666 | 21.6545 | 449959 | 15538 | 450835 | 7486 | 872 | 11.6484 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | * | 97.3214 | 96.6619 | 97.9899 | 88.6072 | 1361 | 47 | 1365 | 28 | 4 | 14.2857 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7746 | 96.6611 | 98.9141 | 61.8918 | 63169 | 2182 | 63489 | 697 | 270 | 38.7374 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | * | 97.2310 | 96.6601 | 97.8088 | 86.7125 | 492 | 17 | 491 | 11 | 3 | 27.2727 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | * | 97.7160 | 96.6601 | 98.7952 | 83.3612 | 492 | 17 | 492 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7091 | 96.6601 | 98.7812 | 70.7632 | 29462 | 1018 | 29015 | 358 | 247 | 68.9944 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.3706 | 96.6600 | 84.8496 | 55.8282 | 9203 | 318 | 9196 | 1642 | 1614 | 98.2948 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | het | 85.9375 | 96.6599 | 77.3564 | 84.6449 | 4254 | 147 | 4243 | 1242 | 59 | 4.7504 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8289 | 96.6593 | 96.9990 | 75.1800 | 4832 | 167 | 4816 | 149 | 119 | 79.8658 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8289 | 96.6593 | 96.9990 | 75.1800 | 4832 | 167 | 4816 | 149 | 119 | 79.8658 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6086 | 96.6584 | 94.5813 | 87.2366 | 6653 | 230 | 6720 | 385 | 17 | 4.4156 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3979 | 96.6584 | 94.1699 | 79.6348 | 3905 | 135 | 3602 | 223 | 191 | 85.6502 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5900 | 96.6582 | 98.5399 | 68.6164 | 3442 | 119 | 3442 | 51 | 43 | 84.3137 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.1729 | 96.6574 | 52.6555 | 45.4921 | 347 | 12 | 347 | 312 | 311 | 99.6795 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7409 | 96.6568 | 98.8496 | 59.7558 | 29461 | 1019 | 60407 | 703 | 560 | 79.6586 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7409 | 96.6568 | 98.8496 | 59.7558 | 29461 | 1019 | 60407 | 703 | 560 | 79.6586 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.0379 | 96.6562 | 99.4597 | 63.5583 | 13297 | 460 | 13254 | 72 | 47 | 65.2778 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.0379 | 96.6562 | 99.4597 | 63.5583 | 13297 | 460 | 13254 | 72 | 47 | 65.2778 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3498 | 96.6561 | 98.0535 | 76.7797 | 1214 | 42 | 1209 | 24 | 3 | 12.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | het | 97.0787 | 96.6555 | 97.5057 | 86.7845 | 289 | 10 | 430 | 11 | 5 | 45.4545 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | het | 97.5959 | 96.6543 | 98.5560 | 94.9814 | 520 | 18 | 546 | 8 | 1 | 12.5000 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | het | 92.9009 | 96.6543 | 89.4281 | 96.3152 | 520 | 18 | 516 | 61 | 52 | 85.2459 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5366 | 96.6538 | 96.4198 | 83.9921 | 751 | 26 | 781 | 29 | 8 | 27.5862 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.9079 | 96.6535 | 99.1952 | 86.9004 | 491 | 17 | 493 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | het | 98.2231 | 96.6531 | 99.8449 | 50.2864 | 13515 | 468 | 13519 | 21 | 2 | 9.5238 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | * | 96.7832 | 96.6528 | 96.9140 | 81.7370 | 11117 | 385 | 11117 | 354 | 92 | 25.9887 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.7816 | 96.6527 | 91.0761 | 57.6667 | 693 | 24 | 694 | 68 | 49 | 72.0588 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.0389 | 96.6511 | 99.4672 | 62.4367 | 6205 | 215 | 11948 | 64 | 47 | 73.4375 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.0389 | 96.6511 | 99.4672 | 62.4367 | 6205 | 215 | 11948 | 64 | 47 | 73.4375 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3494 | 96.6507 | 98.0583 | 77.4370 | 202 | 7 | 202 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3494 | 96.6507 | 98.0583 | 76.5108 | 202 | 7 | 202 | 4 | 3 | 75.0000 | |