PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24651-24700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0306 | 96.7239 | 99.3730 | 52.6355 | 620 | 21 | 634 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.3347 | 96.7239 | 100.0000 | 43.9244 | 620 | 21 | 623 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | * | * | 97.4870 | 96.7226 | 98.2635 | 70.9237 | 6168 | 209 | 6168 | 109 | 84 | 77.0642 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4775 | 96.7213 | 98.2456 | 75.2174 | 59 | 2 | 56 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | * | 89.9390 | 96.7213 | 84.0456 | 96.8466 | 295 | 10 | 295 | 56 | 4 | 7.1429 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3333 | 96.7213 | 100.0000 | 68.6833 | 118 | 4 | 176 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | het | 96.7213 | 96.7213 | 96.7213 | 89.9007 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 90.1135 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.9350 | 96.7213 | 95.1613 | 91.7663 | 59 | 2 | 59 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 91.9585 | 59 | 2 | 59 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_siren | * | 97.5207 | 96.7213 | 98.3333 | 85.9287 | 295 | 10 | 295 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 84.8921 | 96.7213 | 75.6410 | 96.9838 | 118 | 4 | 118 | 38 | 3 | 7.8947 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.9134 | 96.7213 | 89.3939 | 84.5794 | 59 | 2 | 59 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.3250 | 96.7213 | 84.7222 | 88.5350 | 59 | 2 | 61 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7213 | 96.7213 | 96.7213 | 67.4667 | 118 | 4 | 118 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.0137 | 96.7213 | 53.6458 | 60.5749 | 59 | 2 | 103 | 89 | 2 | 2.2472 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 95.2665 | 96.7213 | 93.8547 | 65.6430 | 118 | 4 | 168 | 11 | 1 | 9.0909 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8376 | 96.7213 | 94.9698 | 72.2501 | 472 | 16 | 472 | 25 | 21 | 84.0000 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | * | 95.1613 | 96.7213 | 93.6508 | 96.0377 | 295 | 10 | 295 | 20 | 4 | 20.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.7587 | 96.7213 | 90.9722 | 86.3636 | 118 | 4 | 131 | 13 | 10 | 76.9231 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0574 | 96.7213 | 97.3958 | 75.1053 | 472 | 16 | 748 | 20 | 14 | 70.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0447 | 96.7213 | 99.4048 | 55.2000 | 118 | 4 | 167 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 95.4647 | 118 | 4 | 118 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1193 | 96.7213 | 97.5207 | 95.1210 | 118 | 4 | 118 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | * | 97.1993 | 96.7213 | 97.6821 | 93.5570 | 2065 | 70 | 2065 | 49 | 15 | 30.6122 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2369 | 96.7202 | 99.8020 | 58.3539 | 5544 | 188 | 5545 | 11 | 9 | 81.8182 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6016 | 96.7192 | 96.4844 | 63.4807 | 737 | 25 | 741 | 27 | 4 | 14.8148 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.9542 | 96.7192 | 97.1903 | 68.5416 | 737 | 25 | 761 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2023 | 96.7189 | 99.7319 | 41.3917 | 2594 | 88 | 2604 | 7 | 7 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | * | 96.8601 | 96.7186 | 97.0020 | 78.5397 | 20043 | 680 | 20028 | 619 | 164 | 26.4943 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | homalt | 98.3317 | 96.7181 | 100.0000 | 69.7502 | 3949 | 134 | 3947 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0062 | 96.7177 | 99.3296 | 54.4844 | 19536 | 663 | 19261 | 130 | 58 | 44.6154 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.0436 | 96.7173 | 99.4069 | 53.0396 | 17265 | 586 | 17262 | 103 | 9 | 8.7379 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | homalt | 98.3281 | 96.7169 | 99.9939 | 61.4654 | 16350 | 555 | 16345 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | homalt | 96.3093 | 96.7164 | 95.9056 | 58.3612 | 10250 | 348 | 10283 | 439 | 309 | 70.3872 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | * | 96.7509 | 96.7160 | 96.7858 | 76.5215 | 10720 | 364 | 10720 | 356 | 89 | 25.0000 | |
| gduggal-bwavard | SNP | ti | map_siren | * | 97.1130 | 96.7157 | 97.5137 | 63.7053 | 97059 | 3296 | 96090 | 2450 | 278 | 11.3469 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0247 | 96.7157 | 95.3435 | 43.9443 | 4535 | 154 | 4607 | 225 | 89 | 39.5556 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | * | 96.0083 | 96.7156 | 95.3112 | 86.9753 | 1119 | 38 | 1118 | 55 | 9 | 16.3636 | |
| raldana-dualsentieon | INDEL | D6_15 | * | * | 97.6719 | 96.7155 | 98.6474 | 52.2270 | 25235 | 857 | 25235 | 346 | 333 | 96.2428 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9752 | 96.7154 | 99.2683 | 46.8913 | 10718 | 364 | 10718 | 79 | 74 | 93.6709 | |