PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23751-23800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.1096 | 97.0541 | 99.1883 | 80.7169 | 1219 | 37 | 1222 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.9878 | 97.0541 | 98.9396 | 75.7755 | 1219 | 37 | 1213 | 13 | 1 | 7.6923 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.3619 | 97.0541 | 95.6795 | 75.5568 | 1219 | 37 | 1218 | 55 | 35 | 63.6364 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0189 | 97.0540 | 87.4804 | 71.5621 | 593 | 18 | 559 | 80 | 76 | 95.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.3991 | 97.0540 | 88.1703 | 71.9469 | 593 | 18 | 559 | 75 | 71 | 94.6667 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.1740 | 97.0537 | 85.9659 | 38.7403 | 4480 | 136 | 4490 | 733 | 8 | 1.0914 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | * | 96.7796 | 97.0534 | 96.5074 | 85.5741 | 527 | 16 | 525 | 19 | 5 | 26.3158 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7565 | 97.0533 | 96.4614 | 41.7715 | 2075 | 63 | 2099 | 77 | 36 | 46.7532 | |
| ckim-dragen | INDEL | D6_15 | map_siren | * | 97.6267 | 97.0530 | 98.2072 | 86.4726 | 494 | 15 | 493 | 9 | 2 | 22.2222 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | het | 95.9914 | 97.0526 | 94.9532 | 68.8933 | 20580 | 625 | 20583 | 1094 | 492 | 44.9726 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e1 | * | 97.1894 | 97.0523 | 97.3269 | 78.1843 | 16166 | 491 | 16166 | 444 | 120 | 27.0270 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | * | 97.3294 | 97.0522 | 97.6082 | 98.7845 | 856 | 26 | 857 | 21 | 7 | 33.3333 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | het | 75.1230 | 97.0518 | 61.2774 | 50.8228 | 13760 | 418 | 14027 | 8864 | 298 | 3.3619 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8868 | 97.0512 | 98.7368 | 59.9494 | 1876 | 57 | 1876 | 24 | 23 | 95.8333 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1645 | 97.0494 | 97.2799 | 70.1462 | 3947 | 120 | 3934 | 110 | 98 | 89.0909 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1046 | 97.0494 | 97.1598 | 70.1203 | 3947 | 120 | 3934 | 115 | 99 | 86.0870 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.8181 | 97.0493 | 87.1220 | 66.7143 | 27134 | 825 | 26966 | 3986 | 179 | 4.4907 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | * | 91.9255 | 97.0492 | 87.3156 | 97.0758 | 296 | 9 | 296 | 43 | 4 | 9.3023 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9502 | 97.0480 | 96.8526 | 49.3747 | 2367 | 72 | 2431 | 79 | 39 | 49.3671 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | het | 97.5401 | 97.0479 | 98.0373 | 72.8725 | 29718 | 904 | 29720 | 595 | 164 | 27.5630 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.1791 | 97.0465 | 97.3121 | 78.1370 | 16002 | 487 | 16002 | 442 | 119 | 26.9231 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | * | 97.9838 | 97.0464 | 98.9394 | 19.5056 | 493419 | 15017 | 493754 | 5293 | 700 | 13.2250 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.2283 | 97.0430 | 99.4429 | 83.5246 | 361 | 11 | 357 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.8775 | 97.0427 | 78.6399 | 89.4490 | 886 | 27 | 902 | 245 | 33 | 13.4694 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7241 | 97.0414 | 53.2000 | 69.5122 | 164 | 5 | 133 | 117 | 117 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | homalt | 98.2869 | 97.0402 | 99.5662 | 88.1078 | 918 | 28 | 918 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | homalt | 97.9723 | 97.0402 | 98.9224 | 91.0078 | 459 | 14 | 459 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3258 | 97.0402 | 99.6459 | 43.8344 | 10754 | 328 | 10693 | 38 | 34 | 89.4737 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.0284 | 97.0399 | 97.0169 | 59.6380 | 31045 | 947 | 33661 | 1035 | 709 | 68.5024 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.9180 | 97.0394 | 96.7968 | 74.8717 | 4851 | 148 | 4835 | 160 | 117 | 73.1250 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.9180 | 97.0394 | 96.7968 | 74.8717 | 4851 | 148 | 4835 | 160 | 117 | 73.1250 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3163 | 97.0393 | 99.6273 | 57.4974 | 1606 | 49 | 1604 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.3150 | 97.0389 | 84.4624 | 59.0100 | 1147 | 35 | 1147 | 211 | 208 | 98.5782 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.7612 | 97.0370 | 98.4962 | 87.8205 | 131 | 4 | 131 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0370 | 97.0370 | 97.0370 | 86.7257 | 131 | 4 | 131 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 83.3542 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 90.5802 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 93.0123 | 97.0370 | 89.3082 | 87.6072 | 131 | 4 | 142 | 17 | 9 | 52.9412 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.2727 | 97.0370 | 93.5714 | 90.2643 | 131 | 4 | 131 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.8383 | 97.0370 | 80.2326 | 59.6717 | 393 | 12 | 276 | 68 | 64 | 94.1176 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2446 | 97.0370 | 91.6084 | 92.2744 | 131 | 4 | 131 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | * | 98.1740 | 97.0367 | 99.3383 | 57.2224 | 4650 | 142 | 4654 | 31 | 31 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | * | 92.8160 | 97.0360 | 88.9477 | 85.9871 | 7628 | 233 | 7565 | 940 | 50 | 5.3192 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.3922 | 97.0358 | 90.0123 | 67.8126 | 53982 | 1649 | 53380 | 5923 | 338 | 5.7066 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.7864 | 97.0356 | 87.0760 | 55.5089 | 8118 | 248 | 8112 | 1204 | 1184 | 98.3389 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.1509 | 97.0356 | 99.2922 | 64.9042 | 1964 | 60 | 1964 | 14 | 0 | 0.0000 | |