PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23451-23500 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.0392 | 97.1503 | 98.9446 | 91.0613 | 375 | 11 | 375 | 4 | 2 | 50.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.7836 | 97.1503 | 98.4252 | 91.2111 | 375 | 11 | 375 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9078 | 97.1503 | 98.6772 | 90.6644 | 375 | 11 | 373 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I6_15 | * | het | 97.7387 | 97.1494 | 98.3352 | 52.6628 | 9747 | 286 | 9746 | 165 | 103 | 62.4242 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2094 | 97.1478 | 99.2945 | 84.5735 | 1124 | 33 | 1126 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5154 | 97.1471 | 99.9228 | 63.2207 | 1294 | 38 | 1294 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | het | 98.4476 | 97.1463 | 99.7841 | 64.1912 | 12017 | 353 | 12019 | 26 | 5 | 19.2308 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | * | 96.9542 | 97.1463 | 96.7628 | 75.1056 | 45855 | 1347 | 45852 | 1534 | 347 | 22.6206 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | het | 91.3804 | 97.1448 | 86.2618 | 95.0573 | 1463 | 43 | 1463 | 233 | 27 | 11.5880 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1896 | 97.1447 | 99.2573 | 75.8638 | 1497 | 44 | 1470 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | segdup | het | 97.8517 | 97.1439 | 98.5698 | 95.5379 | 5136 | 151 | 5100 | 74 | 15 | 20.2703 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | het | 79.4528 | 97.1429 | 67.2131 | 96.8634 | 204 | 6 | 205 | 100 | 13 | 13.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | * | 98.2573 | 97.1429 | 99.3976 | 90.0360 | 170 | 5 | 165 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | het | 94.6636 | 97.1429 | 92.3077 | 96.3848 | 204 | 6 | 204 | 17 | 2 | 11.7647 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.5102 | 34 | 1 | 36 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.7715 | 170 | 5 | 170 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5507 | 97.1429 | 100.0000 | 85.6540 | 34 | 1 | 34 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 78.4302 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | map_siren | het | 92.5170 | 97.1429 | 88.3117 | 88.1992 | 272 | 8 | 272 | 36 | 3 | 8.3333 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | het | 96.0000 | 97.1429 | 94.8837 | 95.4908 | 204 | 6 | 204 | 11 | 2 | 18.1818 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 77.3006 | 34 | 1 | 37 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2984 | 97.1429 | 99.4819 | 65.9011 | 170 | 5 | 192 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_siren | het | 96.6183 | 97.1429 | 96.0993 | 87.5935 | 272 | 8 | 271 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | het | 95.3271 | 97.1429 | 93.5780 | 96.4748 | 204 | 6 | 204 | 14 | 2 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 79.1104 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | * | 98.2659 | 97.1429 | 99.4152 | 91.3984 | 170 | 5 | 170 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5507 | 97.1429 | 100.0000 | 78.3439 | 34 | 1 | 34 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.6757 | 34 | 1 | 36 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5507 | 97.1429 | 100.0000 | 93.0712 | 34 | 1 | 37 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.9469 | 170 | 5 | 170 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | het | 98.3805 | 97.1421 | 99.6509 | 65.0308 | 7138 | 210 | 7136 | 25 | 4 | 16.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2538 | 97.1415 | 99.3919 | 50.2946 | 35546 | 1046 | 35469 | 217 | 179 | 82.4885 | |
| hfeng-pmm1 | INDEL | I6_15 | HG002complexvar | * | 98.2070 | 97.1411 | 99.2967 | 57.3261 | 4655 | 137 | 4659 | 33 | 33 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002complexvar | * | 98.1553 | 97.1411 | 99.1910 | 57.4123 | 4655 | 137 | 4659 | 38 | 37 | 97.3684 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8063 | 97.1411 | 98.4806 | 47.1994 | 17737 | 522 | 17759 | 274 | 239 | 87.2263 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1544 | 97.1410 | 99.1891 | 68.9245 | 3058 | 90 | 3058 | 25 | 8 | 32.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9660 | 97.1407 | 98.8054 | 65.3168 | 2582 | 76 | 2564 | 31 | 30 | 96.7742 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2447 | 97.1397 | 99.3753 | 55.6990 | 15588 | 459 | 15589 | 98 | 89 | 90.8163 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | het | 96.2796 | 97.1391 | 95.4352 | 88.1801 | 2241 | 66 | 2237 | 107 | 9 | 8.4112 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4585 | 97.1390 | 97.7802 | 53.9739 | 14362 | 423 | 14360 | 326 | 315 | 96.6258 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3623 | 97.1387 | 99.6172 | 75.9529 | 1324 | 39 | 1301 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | homalt | 98.3607 | 97.1386 | 99.6139 | 76.6034 | 1290 | 38 | 1290 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | homalt | 98.5034 | 97.1370 | 99.9088 | 42.9389 | 3291 | 97 | 3286 | 3 | 2 | 66.6667 | |