PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23251-23300 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | tech_badpromoters | * | 84.1610 | 97.2222 | 74.1935 | 52.7919 | 70 | 2 | 69 | 24 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.6450 | 35 | 1 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 89.4789 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.2895 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 81.5642 | 35 | 1 | 33 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 85.4626 | 35 | 1 | 33 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.3495 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e1 | * | 98.1308 | 97.2222 | 99.0566 | 86.1913 | 2835 | 81 | 2835 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 52.9801 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 50.0000 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.5522 | 35 | 1 | 35 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 80.9259 | 105 | 3 | 103 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | het | 98.4558 | 97.2204 | 99.7229 | 66.1731 | 19797 | 566 | 19797 | 55 | 9 | 16.3636 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | * | 97.6974 | 97.2203 | 98.1793 | 98.7700 | 1399 | 40 | 1402 | 26 | 10 | 38.4615 | |
| ndellapenna-hhga | INDEL | I6_15 | * | het | 97.5570 | 97.2192 | 97.8973 | 54.2636 | 9754 | 279 | 9777 | 210 | 127 | 60.4762 | |
| mlin-fermikit | INDEL | D6_15 | * | homalt | 93.1078 | 97.2178 | 89.3312 | 62.5603 | 6150 | 176 | 6171 | 737 | 721 | 97.8290 | |
| mlin-fermikit | INDEL | I1_5 | * | het | 97.2425 | 97.2166 | 97.2684 | 53.2963 | 76841 | 2200 | 76701 | 2154 | 2108 | 97.8644 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | het | 98.4376 | 97.2165 | 99.6897 | 74.3678 | 8033 | 230 | 8033 | 25 | 12 | 48.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9489 | 97.2165 | 98.6923 | 51.4779 | 36847 | 1055 | 36679 | 486 | 451 | 92.7984 | |
| qzeng-custom | SNP | tv | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5479 | 97.2152 | 47.2013 | 46.3823 | 6493 | 186 | 6527 | 7301 | 7199 | 98.6029 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4015 | 97.2145 | 74.5726 | 47.8842 | 349 | 10 | 349 | 119 | 117 | 98.3193 | |
| ckim-isaac | INDEL | D1_5 | segdup | homalt | 98.4485 | 97.2145 | 99.7143 | 91.3644 | 349 | 10 | 349 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | het | 96.7544 | 97.2143 | 96.2988 | 74.5638 | 3071 | 88 | 2836 | 109 | 82 | 75.2294 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | * | 97.8083 | 97.2135 | 98.4105 | 86.0853 | 2163 | 62 | 2167 | 35 | 6 | 17.1429 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2834 | 97.2128 | 97.3541 | 36.0909 | 7150 | 205 | 7175 | 195 | 109 | 55.8974 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6175 | 97.2128 | 98.0256 | 69.1545 | 2581 | 74 | 2532 | 51 | 39 | 76.4706 | |
| astatham-gatk | SNP | tv | HG002complexvar | het | 98.5778 | 97.2116 | 99.9829 | 21.9634 | 146528 | 4203 | 146456 | 25 | 11 | 44.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | het | 97.3404 | 97.2112 | 97.4700 | 92.1200 | 1464 | 42 | 1464 | 38 | 23 | 60.5263 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m0_e0 | het | 98.4715 | 97.2109 | 99.7652 | 55.6290 | 13593 | 390 | 13597 | 32 | 4 | 12.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 97.7583 | 97.2106 | 98.3122 | 87.0161 | 697 | 20 | 699 | 12 | 3 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9808 | 97.2102 | 98.7638 | 71.4047 | 1568 | 45 | 1518 | 19 | 12 | 63.1579 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4583 | 97.2091 | 99.7401 | 57.5217 | 17659 | 507 | 17653 | 46 | 39 | 84.7826 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4583 | 97.2091 | 99.7401 | 57.5217 | 17659 | 507 | 17653 | 46 | 39 | 84.7826 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.9167 | 97.2077 | 87.1719 | 66.1173 | 3899 | 112 | 3853 | 567 | 13 | 2.2928 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | homalt | 98.4327 | 97.2060 | 99.6907 | 70.5354 | 26754 | 769 | 26756 | 83 | 30 | 36.1446 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | het | 98.3855 | 97.2047 | 99.5955 | 74.1909 | 12310 | 354 | 12310 | 50 | 23 | 46.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | * | 96.0095 | 97.2046 | 94.8434 | 90.8840 | 4451 | 128 | 4451 | 242 | 52 | 21.4876 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | homalt | 98.5295 | 97.2036 | 99.8921 | 62.3227 | 17797 | 512 | 17597 | 19 | 15 | 78.9474 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2955 | 97.2036 | 99.4122 | 43.2207 | 2607 | 75 | 2706 | 16 | 10 | 62.5000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9357 | 97.2033 | 98.6791 | 48.0009 | 20020 | 576 | 20021 | 268 | 262 | 97.7612 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.2000 | 97.2028 | 99.2178 | 83.0336 | 2641 | 76 | 2537 | 20 | 1 | 5.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | * | 95.3330 | 97.2027 | 93.5339 | 77.3132 | 21162 | 609 | 20989 | 1451 | 95 | 6.5472 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |