PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23151-23200 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 80.5000 | 97.2526 | 68.6708 | 63.3133 | 3823 | 108 | 3849 | 1756 | 13 | 0.7403 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3332 | 97.2524 | 99.4383 | 69.4992 | 15149 | 428 | 15226 | 86 | 78 | 90.6977 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.9891 | 97.2501 | 85.4856 | 71.8215 | 34445 | 974 | 34119 | 5793 | 280 | 4.8334 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002complexvar | * | 98.2632 | 97.2498 | 99.2980 | 66.8048 | 1273 | 36 | 1273 | 9 | 8 | 88.8889 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.2253 | 97.2498 | 99.2206 | 67.1110 | 1273 | 36 | 1273 | 10 | 9 | 90.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | * | 98.2632 | 97.2498 | 99.2980 | 66.9502 | 1273 | 36 | 1273 | 9 | 9 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_siren | * | 98.1160 | 97.2495 | 98.9980 | 81.6071 | 495 | 14 | 494 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_siren | * | 97.2468 | 97.2495 | 97.2441 | 86.7501 | 495 | 14 | 494 | 14 | 2 | 14.2857 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7571 | 106 | 3 | 106 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | homalt | 96.9360 | 97.2477 | 96.6263 | 87.0809 | 742 | 21 | 1117 | 39 | 35 | 89.7436 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | homalt | 98.2786 | 97.2477 | 99.3316 | 84.9709 | 742 | 21 | 743 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2706 | 106 | 3 | 106 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.5066 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | het | 98.3259 | 97.2468 | 99.4291 | 88.5758 | 5051 | 143 | 5051 | 29 | 11 | 37.9310 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | het | 98.5086 | 97.2457 | 99.8048 | 55.1586 | 27610 | 782 | 27610 | 54 | 6 | 11.1111 | |
| ckim-gatk | INDEL | I6_15 | HG002complexvar | * | 98.1470 | 97.2454 | 99.0654 | 57.0085 | 4660 | 132 | 4664 | 44 | 43 | 97.7273 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | het | 98.3289 | 97.2454 | 99.4367 | 88.6583 | 5119 | 145 | 5119 | 29 | 11 | 37.9310 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 97.5138 | 97.2452 | 97.7839 | 84.6774 | 706 | 20 | 706 | 16 | 4 | 25.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.5434 | 97.2452 | 70.2073 | 58.5180 | 10802 | 306 | 10840 | 4600 | 4440 | 96.5217 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5415 | 97.2452 | 99.8728 | 66.2892 | 9425 | 267 | 9425 | 12 | 5 | 41.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.4844 | 97.2451 | 91.8762 | 38.9766 | 6495 | 184 | 6322 | 559 | 498 | 89.0877 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.2619 | 97.2450 | 74.3373 | 66.4617 | 2612 | 74 | 2636 | 910 | 12 | 1.3187 | |
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | * | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | het | 97.5364 | 97.2441 | 97.8304 | 85.6618 | 494 | 14 | 496 | 11 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | het | 97.2633 | 97.2441 | 97.2826 | 84.5216 | 494 | 14 | 716 | 20 | 12 | 60.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8218 | 97.2441 | 98.4064 | 67.2181 | 741 | 21 | 741 | 12 | 7 | 58.3333 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9511 | 97.2441 | 98.6684 | 67.2767 | 741 | 21 | 741 | 10 | 7 | 70.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | het | 98.4904 | 97.2440 | 99.7691 | 66.6179 | 12526 | 355 | 12529 | 29 | 5 | 17.2414 | |
| mlin-fermikit | SNP | ti | HG002complexvar | * | 98.2652 | 97.2431 | 99.3090 | 16.9696 | 494420 | 14017 | 494405 | 3440 | 3276 | 95.2326 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.4707 | 97.2414 | 97.7011 | 69.7917 | 423 | 12 | 425 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0301 | 97.2414 | 98.8318 | 65.5949 | 423 | 12 | 423 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6365 | 97.2403 | 98.0360 | 81.9551 | 1797 | 51 | 1797 | 36 | 17 | 47.2222 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.9954 | 97.2403 | 98.7624 | 61.1289 | 1198 | 34 | 1197 | 15 | 13 | 86.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6000 | 97.2387 | 100.0000 | 79.3163 | 493 | 14 | 478 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | * | 97.4507 | 97.2380 | 97.6643 | 97.6120 | 3591 | 102 | 3596 | 86 | 39 | 45.3488 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.2904 | 97.2376 | 84.2697 | 84.6816 | 352 | 10 | 225 | 42 | 41 | 97.6190 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | het | 98.3472 | 97.2372 | 99.4829 | 88.9494 | 2886 | 82 | 2886 | 15 | 5 | 33.3333 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | het | 97.3192 | 97.2372 | 97.4013 | 90.0480 | 2886 | 82 | 2886 | 77 | 22 | 28.5714 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.1641 | 97.2350 | 99.1111 | 53.7037 | 211 | 6 | 223 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.9485 | 97.2350 | 98.6726 | 55.9454 | 211 | 6 | 223 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | homalt | 98.3428 | 97.2348 | 99.4764 | 88.0642 | 1723 | 49 | 1710 | 9 | 6 | 66.6667 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5310 | 97.2348 | 99.8622 | 66.0735 | 9424 | 268 | 9424 | 13 | 11 | 84.6154 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6748 | 97.2347 | 98.1189 | 98.7054 | 1301 | 37 | 1304 | 25 | 9 | 36.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2337 | 97.2344 | 99.2537 | 66.3739 | 1336 | 38 | 1330 | 10 | 9 | 90.0000 | |