PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22951-23000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | het | 97.2372 | 97.3111 | 97.1634 | 84.0911 | 2280 | 63 | 2295 | 67 | 27 | 40.2985 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9456 | 97.3101 | 98.5895 | 80.0705 | 4124 | 114 | 4124 | 59 | 15 | 25.4237 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | homalt | 98.3869 | 97.3084 | 99.4896 | 73.1420 | 8966 | 248 | 8967 | 46 | 9 | 19.5652 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2992 | 97.3060 | 99.3129 | 66.5408 | 6068 | 168 | 6071 | 42 | 21 | 50.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | het | 88.7208 | 97.3054 | 81.5281 | 85.1064 | 7150 | 198 | 7128 | 1615 | 97 | 6.0062 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8600 | 97.3046 | 98.4218 | 73.5584 | 722 | 20 | 686 | 11 | 5 | 45.4545 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| gduggal-bwavard | SNP | * | HG002complexvar | het | 98.2730 | 97.3044 | 99.2610 | 20.1947 | 452952 | 12548 | 441659 | 3288 | 2162 | 65.7543 | |
| gduggal-bwavard | SNP | tv | map_siren | homalt | 98.5863 | 97.3028 | 99.9041 | 54.3761 | 16775 | 465 | 16665 | 16 | 12 | 75.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2439 | 97.3027 | 97.1852 | 57.6417 | 35605 | 987 | 38256 | 1108 | 730 | 65.8845 | |
| cchapple-custom | SNP | tv | map_l125_m1_e0 | * | 96.5512 | 97.3027 | 95.8113 | 74.0329 | 15584 | 432 | 15577 | 681 | 116 | 17.0338 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.9658 | 97.3025 | 98.6381 | 89.4909 | 505 | 14 | 507 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.0446 | 97.3019 | 89.1441 | 72.7080 | 17094 | 474 | 16957 | 2065 | 141 | 6.8281 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | het | 97.4472 | 97.3011 | 97.5938 | 86.8092 | 1370 | 38 | 1379 | 34 | 9 | 26.4706 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | * | 97.7543 | 97.3011 | 98.2117 | 98.7639 | 1370 | 38 | 1373 | 25 | 9 | 36.0000 | |
| gduggal-bwaplat | SNP | tv | * | homalt | 98.6202 | 97.3009 | 99.9757 | 22.0523 | 366944 | 10179 | 366871 | 89 | 82 | 92.1348 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8058 | 97.3008 | 98.3161 | 87.6421 | 757 | 21 | 759 | 13 | 4 | 30.7692 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1551 | 97.3006 | 99.0247 | 63.5436 | 17338 | 481 | 17362 | 171 | 64 | 37.4269 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | het | 98.4798 | 97.2993 | 99.6893 | 57.3735 | 10268 | 285 | 10267 | 32 | 2 | 6.2500 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.7286 | 97.2989 | 96.1650 | 69.1079 | 1657 | 46 | 1655 | 66 | 14 | 21.2121 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | * | 92.1711 | 97.2989 | 87.5568 | 86.0626 | 11707 | 325 | 11568 | 1644 | 70 | 4.2579 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | homalt | 98.4958 | 97.2985 | 99.7229 | 71.9123 | 2161 | 60 | 2159 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | SNP | * | segdup | het | 98.1316 | 97.2975 | 98.9803 | 94.4886 | 16849 | 468 | 16695 | 172 | 22 | 12.7907 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.3173 | 97.2973 | 99.3590 | 56.7867 | 468 | 13 | 465 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | het | 87.3006 | 97.2973 | 79.1667 | 95.5679 | 36 | 1 | 38 | 10 | 8 | 80.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 81.3953 | 72 | 2 | 72 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 88.0399 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.8132 | 36 | 1 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | het | 85.3948 | 97.2973 | 76.0870 | 93.4566 | 36 | 1 | 35 | 11 | 5 | 45.4545 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.0843 | 97.2973 | 87.4016 | 37.3944 | 684 | 19 | 777 | 112 | 107 | 95.5357 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2973 | 97.2973 | 97.2973 | 88.3281 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6301 | 97.2973 | 100.0000 | 76.6234 | 36 | 1 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | het | 97.8051 | 97.2973 | 98.3182 | 81.2333 | 756 | 21 | 760 | 13 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.0926 | 97.2973 | 98.9011 | 95.4850 | 180 | 5 | 180 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.3491 | 36 | 1 | 36 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2973 | 97.2973 | 97.2973 | 70.8661 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | het | 93.2216 | 97.2973 | 89.4737 | 95.2736 | 36 | 1 | 34 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.2340 | 36 | 1 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.9592 | 97.2973 | 98.6301 | 85.5015 | 144 | 4 | 144 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3748 | 97.2973 | 99.4764 | 82.8507 | 756 | 21 | 760 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0350 | 97.2973 | 96.7742 | 95.1360 | 180 | 5 | 180 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.5862 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.0504 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.6301 | 97.2973 | 100.0000 | 63.2653 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.7647 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.8788 | 36 | 1 | 36 | 0 | 0 | ||