PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22601-22650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6957 | 97.4249 | 100.0000 | 76.3562 | 227 | 6 | 231 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | het | 98.4531 | 97.4235 | 99.5046 | 89.2351 | 3214 | 85 | 3214 | 16 | 6 | 37.5000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0545 | 97.4227 | 98.6945 | 75.5740 | 378 | 10 | 378 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4375 | 97.4227 | 99.4737 | 74.0968 | 378 | 10 | 378 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0545 | 97.4227 | 98.6945 | 74.6358 | 378 | 10 | 378 | 5 | 1 | 20.0000 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1930 | 97.4227 | 82.2454 | 94.1018 | 1890 | 50 | 1890 | 408 | 18 | 4.4118 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6838 | 97.4223 | 97.9467 | 56.1751 | 36925 | 977 | 36731 | 770 | 739 | 95.9740 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | * | 95.6014 | 97.4208 | 93.8488 | 91.4722 | 7781 | 206 | 7781 | 510 | 89 | 17.4510 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2689 | 97.4195 | 97.1188 | 75.1529 | 4870 | 129 | 4854 | 144 | 103 | 71.5278 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | * | 96.9502 | 97.4194 | 96.4856 | 92.5352 | 302 | 8 | 302 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.8829 | 151 | 4 | 152 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | * | 97.8783 | 97.4194 | 98.3416 | 86.6297 | 302 | 8 | 593 | 10 | 6 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 81.9477 | 151 | 4 | 152 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6928 | 97.4194 | 100.0000 | 83.3333 | 151 | 4 | 151 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.4480 | 151 | 4 | 152 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3734 | 97.4194 | 99.3464 | 82.9050 | 151 | 4 | 152 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.8829 | 151 | 4 | 152 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.8920 | 97.4192 | 92.4926 | 87.6892 | 4039 | 107 | 4078 | 331 | 106 | 32.0242 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | het | 97.4935 | 97.4186 | 97.5685 | 90.4134 | 3170 | 84 | 3170 | 79 | 22 | 27.8481 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | het | 93.7781 | 97.4183 | 90.4002 | 80.9729 | 13622 | 361 | 13532 | 1437 | 84 | 5.8455 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6920 | 97.4178 | 100.0000 | 77.5262 | 830 | 22 | 794 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | * | 97.9928 | 97.4175 | 98.5749 | 83.4180 | 3659 | 97 | 3666 | 53 | 13 | 24.5283 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8698 | 97.4170 | 96.3288 | 83.1947 | 1320 | 35 | 1207 | 46 | 34 | 73.9130 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7147 | 97.4166 | 98.0146 | 32.9344 | 3884 | 103 | 3900 | 79 | 74 | 93.6709 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.8049 | 97.4163 | 96.2011 | 51.9614 | 10821 | 287 | 18967 | 749 | 273 | 36.4486 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6729 | 97.4150 | 99.9636 | 52.1934 | 11004 | 292 | 10992 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.3036 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.5596 | 97.4138 | 99.7327 | 50.5529 | 11187 | 297 | 11193 | 30 | 28 | 93.3333 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 94.6445 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | homalt | 96.8318 | 97.4138 | 96.2567 | 95.5005 | 113 | 3 | 180 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.4277 | 113 | 3 | 113 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.9227 | 113 | 3 | 113 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6407 | 97.4133 | 97.8690 | 64.6778 | 1883 | 50 | 1883 | 41 | 41 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.5076 | 97.4127 | 93.6755 | 70.3048 | 753 | 20 | 1022 | 69 | 54 | 78.2609 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.7361 | 97.4125 | 88.4882 | 79.5170 | 640 | 17 | 638 | 83 | 78 | 93.9759 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | het | 95.4593 | 97.4118 | 93.5835 | 85.3129 | 828 | 22 | 773 | 53 | 44 | 83.0189 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 93.2231 | 97.4110 | 89.3805 | 93.8420 | 301 | 8 | 303 | 36 | 2 | 5.5556 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | het | 97.7336 | 97.4110 | 98.0583 | 91.0539 | 301 | 8 | 303 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | HG002compoundhet | het | 87.1214 | 97.4108 | 78.7981 | 78.1044 | 3988 | 106 | 3750 | 1009 | 902 | 89.3954 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6451 | 97.4107 | 97.8807 | 69.5745 | 5944 | 158 | 34593 | 749 | 587 | 78.3712 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | het | 98.2137 | 97.4098 | 99.0310 | 49.5355 | 2294 | 61 | 2044 | 20 | 9 | 45.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | homalt | 98.4293 | 97.4093 | 99.4709 | 94.3430 | 188 | 5 | 188 | 1 | 1 | 100.0000 | |