PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22251-22300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.3874 | 97.5345 | 74.3636 | 48.4035 | 8189 | 207 | 8676 | 2991 | 2903 | 97.0578 | |
| asubramanian-gatk | SNP | tv | * | homalt | 98.7491 | 97.5342 | 99.9946 | 20.2324 | 367824 | 9299 | 367810 | 20 | 17 | 85.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2792 | 97.5341 | 99.0358 | 68.7742 | 1503 | 38 | 1438 | 14 | 3 | 21.4286 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7503 | 97.5332 | 97.9684 | 78.6403 | 514 | 13 | 434 | 9 | 9 | 100.0000 | |
| mlin-fermikit | SNP | ti | segdup | * | 98.0976 | 97.5329 | 98.6689 | 85.0585 | 19055 | 482 | 19051 | 257 | 86 | 33.4630 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9578 | 97.5323 | 98.3871 | 83.8380 | 830 | 21 | 793 | 13 | 1 | 7.6923 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | * | 97.7659 | 97.5320 | 98.0010 | 98.2503 | 2055 | 52 | 2059 | 42 | 15 | 35.7143 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0894 | 97.5318 | 94.6889 | 83.3900 | 1225 | 31 | 1248 | 70 | 7 | 10.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8006 | 97.5318 | 98.0707 | 78.8291 | 1225 | 31 | 1220 | 24 | 7 | 29.1667 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | * | 98.5596 | 97.5316 | 99.6095 | 77.4194 | 11735 | 297 | 11735 | 46 | 22 | 47.8261 | |
| astatham-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2844 | 97.5309 | 78.9862 | 44.6999 | 7268 | 184 | 7277 | 1936 | 72 | 3.7190 | |
| dgrover-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 80.6922 | 97.5309 | 68.8119 | 59.1507 | 395 | 10 | 278 | 126 | 121 | 96.0317 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.3467 | 97.5309 | 99.1763 | 83.8090 | 1264 | 32 | 1204 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0302 | 97.5303 | 98.5353 | 67.8515 | 63737 | 1614 | 63506 | 944 | 836 | 88.5593 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0302 | 97.5303 | 98.5353 | 67.8515 | 63737 | 1614 | 63506 | 944 | 836 | 88.5593 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.1283 | 97.5299 | 73.9648 | 66.0177 | 1303 | 33 | 1304 | 459 | 12 | 2.6144 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9401 | 97.5296 | 98.3541 | 69.0300 | 1974 | 50 | 1972 | 33 | 5 | 15.1515 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | * | 98.0282 | 97.5292 | 98.5322 | 58.5722 | 5171 | 131 | 5169 | 77 | 70 | 90.9091 | |
| ckim-isaac | SNP | ti | * | het | 98.7325 | 97.5284 | 99.9667 | 15.6908 | 1250214 | 31683 | 1250525 | 417 | 31 | 7.4341 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | * | 97.7935 | 97.5281 | 98.0604 | 98.3524 | 2170 | 55 | 2174 | 43 | 15 | 34.8837 | |
| jli-custom | SNP | ti | map_l150_m0_e0 | het | 98.3675 | 97.5280 | 99.2216 | 76.7991 | 4971 | 126 | 4971 | 39 | 15 | 38.4615 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.5010 | 97.5270 | 99.4946 | 34.2043 | 1262 | 32 | 1378 | 7 | 7 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5017 | 97.5265 | 93.5593 | 68.9474 | 276 | 7 | 276 | 19 | 19 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1346 | 97.5265 | 92.8571 | 69.6281 | 276 | 7 | 273 | 21 | 21 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2859 | 97.5265 | 91.2536 | 67.7934 | 276 | 7 | 313 | 30 | 28 | 93.3333 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5334 | 97.5261 | 86.2345 | 56.9835 | 4573 | 116 | 4523 | 722 | 38 | 5.2632 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8256 | 97.5251 | 96.1361 | 70.1065 | 17378 | 441 | 18561 | 746 | 415 | 55.6300 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | het | 95.6311 | 97.5248 | 93.8095 | 92.1023 | 197 | 5 | 197 | 13 | 1 | 7.6923 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m0_e0 | het | 94.2584 | 97.5248 | 91.2037 | 94.9907 | 197 | 5 | 197 | 19 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 86.5934 | 97.5248 | 77.8656 | 94.0076 | 197 | 5 | 197 | 56 | 5 | 8.9286 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | homalt | 96.7348 | 97.5248 | 95.9574 | 79.1173 | 1182 | 30 | 1353 | 57 | 49 | 85.9649 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7466 | 97.5243 | 100.0000 | 41.8848 | 1103 | 28 | 1110 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.2565 | 97.5239 | 96.9905 | 69.1218 | 17133 | 435 | 16952 | 526 | 189 | 35.9316 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0567 | 97.5229 | 90.8285 | 81.7751 | 19094 | 485 | 19163 | 1935 | 59 | 3.0491 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0567 | 97.5229 | 90.8285 | 81.7751 | 19094 | 485 | 19163 | 1935 | 59 | 3.0491 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 72.0736 | 97.5227 | 57.1579 | 53.3629 | 1614 | 41 | 1625 | 1218 | 1207 | 99.0969 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4850 | 97.5225 | 97.4474 | 70.6155 | 1299 | 33 | 1298 | 34 | 32 | 94.1176 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7457 | 97.5225 | 100.0000 | 84.7096 | 433 | 11 | 437 | 0 | 0 | ||
| astatham-gatk | SNP | tv | segdup | het | 98.6416 | 97.5222 | 99.7869 | 92.4167 | 5156 | 131 | 5152 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8601 | 97.5207 | 98.2019 | 84.3405 | 708 | 18 | 710 | 13 | 2 | 15.3846 | |