PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21701-21750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1240 | 97.6833 | 98.5687 | 46.3695 | 17836 | 423 | 17837 | 259 | 256 | 98.8417 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.0148 | 97.6827 | 88.7726 | 47.1861 | 10117 | 240 | 10097 | 1277 | 1255 | 98.2772 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2046 | 97.6826 | 98.7322 | 52.3033 | 35744 | 848 | 35667 | 458 | 432 | 94.3231 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e0 | * | 95.7523 | 97.6821 | 93.8973 | 79.8955 | 45640 | 1083 | 45051 | 2928 | 182 | 6.2159 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | homalt | 98.6256 | 97.6821 | 99.5874 | 87.0236 | 2655 | 63 | 2655 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0250 | 97.6820 | 98.3704 | 46.6267 | 4509 | 107 | 4467 | 74 | 19 | 25.6757 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2536 | 97.6815 | 94.8669 | 70.7534 | 969 | 23 | 998 | 54 | 2 | 3.7037 | |
| gduggal-snapvard | SNP | ti | segdup | homalt | 98.6062 | 97.6815 | 99.5484 | 88.2591 | 7331 | 174 | 7275 | 33 | 32 | 96.9697 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5027 | 97.6813 | 99.3380 | 83.9369 | 2654 | 63 | 2551 | 17 | 1 | 5.8824 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.4584 | 97.6813 | 87.7658 | 87.3735 | 2654 | 63 | 2683 | 374 | 17 | 4.5455 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | het | 81.8658 | 97.6812 | 70.4581 | 90.5282 | 337 | 8 | 446 | 187 | 38 | 20.3209 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5398 | 97.6812 | 97.3988 | 87.9694 | 337 | 8 | 337 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7580 | 97.6793 | 97.8367 | 88.4863 | 1389 | 33 | 1402 | 31 | 10 | 32.2581 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5727 | 97.6793 | 99.4826 | 83.5502 | 1389 | 33 | 1346 | 7 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.5593 | 97.6793 | 93.5294 | 90.1841 | 1389 | 33 | 1431 | 99 | 25 | 25.2525 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.5438 | 97.6792 | 99.4238 | 81.5751 | 1894 | 45 | 1898 | 11 | 1 | 9.0909 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4118 | 97.6791 | 97.1460 | 75.4876 | 6271 | 149 | 6263 | 184 | 164 | 89.1304 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4118 | 97.6791 | 97.1460 | 75.4876 | 6271 | 149 | 6263 | 184 | 164 | 89.1304 | |
| ckim-dragen | SNP | * | map_l250_m2_e0 | * | 97.2970 | 97.6791 | 96.9179 | 89.7648 | 7702 | 183 | 7704 | 245 | 31 | 12.6531 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.8028 | 97.6785 | 97.9275 | 46.3889 | 7279 | 173 | 7182 | 152 | 45 | 29.6053 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3114 | 97.6783 | 98.9529 | 73.0099 | 589 | 14 | 567 | 6 | 2 | 33.3333 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | * | 97.7339 | 97.6781 | 97.7898 | 68.9863 | 48336 | 1149 | 48316 | 1092 | 276 | 25.2747 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | het | 97.6831 | 97.6779 | 97.6883 | 86.3886 | 1304 | 31 | 1310 | 31 | 10 | 32.2581 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9084 | 97.6773 | 45.3144 | 61.3396 | 5467 | 130 | 5469 | 6600 | 6491 | 98.3485 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.7188 | 97.6759 | 99.7842 | 42.6822 | 4539 | 108 | 4623 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | * | 98.7646 | 97.6758 | 99.8779 | 53.5389 | 21265 | 506 | 21269 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | * | 97.7504 | 97.6758 | 97.8250 | 66.4350 | 46817 | 1114 | 46822 | 1041 | 456 | 43.8040 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | * | 98.1178 | 97.6752 | 98.5644 | 88.1773 | 2815 | 67 | 2815 | 41 | 3 | 7.3171 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1683 | 97.6744 | 72.4138 | 74.4493 | 42 | 1 | 42 | 16 | 14 | 87.5000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3374 | 97.6744 | 77.3585 | 67.4847 | 42 | 1 | 41 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 76.4045 | 42 | 1 | 42 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | * | 95.4928 | 97.6744 | 93.4066 | 92.6790 | 84 | 2 | 85 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 36.3636 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 43.4211 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 80.8219 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 80.8219 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.4375 | 97.6744 | 99.2126 | 83.3878 | 252 | 6 | 252 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 56.7010 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 79.9065 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | * | 96.5778 | 97.6744 | 95.5056 | 93.0031 | 84 | 2 | 85 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 47.5000 | 42 | 1 | 42 | 0 | 0 | ||