PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21501-21550 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8571 | 97.7401 | 100.0000 | 71.8699 | 173 | 4 | 173 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7165 | 97.7401 | 99.7126 | 68.9286 | 346 | 8 | 347 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| qzeng-custom | SNP | ti | HG002compoundhet | het | 98.0838 | 97.7380 | 98.4320 | 42.6883 | 9290 | 215 | 11739 | 187 | 45 | 24.0642 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.1787 | 97.7376 | 98.6239 | 91.0177 | 216 | 5 | 215 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | * | 97.9517 | 97.7372 | 98.1672 | 93.8664 | 1339 | 31 | 1339 | 25 | 6 | 24.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | * | 97.8010 | 97.7367 | 97.8655 | 68.4763 | 48365 | 1120 | 48370 | 1055 | 457 | 43.3175 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.1768 | 97.7361 | 96.6239 | 63.2047 | 6044 | 140 | 5953 | 208 | 24 | 11.5385 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8660 | 97.7360 | 97.9964 | 54.8200 | 27326 | 633 | 27341 | 559 | 392 | 70.1252 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.2548 | 97.7351 | 94.8187 | 76.1564 | 21403 | 496 | 21393 | 1169 | 1072 | 91.7023 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2242 | 97.7347 | 98.7186 | 47.5188 | 11606 | 269 | 11787 | 153 | 107 | 69.9346 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.3713 | 97.7346 | 99.0164 | 90.2306 | 302 | 7 | 302 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | het | 93.0663 | 97.7346 | 88.8235 | 94.2157 | 302 | 7 | 302 | 38 | 9 | 23.6842 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.8993 | 97.7346 | 98.0645 | 91.3359 | 302 | 7 | 304 | 6 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 98.5329 | 97.7346 | 99.3443 | 89.5476 | 302 | 7 | 303 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | * | 97.7335 | 97.7335 | 97.7335 | 94.3200 | 1078 | 25 | 1078 | 25 | 22 | 88.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.8561 | 97.7330 | 92.1437 | 91.1616 | 776 | 18 | 821 | 70 | 14 | 20.0000 | |
| gduggal-bwavard | SNP | ti | segdup | * | 98.4790 | 97.7325 | 99.2369 | 92.8031 | 19094 | 443 | 18987 | 146 | 43 | 29.4521 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| jlack-gatk | INDEL | * | map_l125_m0_e0 | * | 92.6519 | 97.7324 | 88.0734 | 92.1312 | 862 | 20 | 864 | 117 | 6 | 5.1282 | |
| jli-custom | INDEL | * | map_l125_m0_e0 | * | 97.8989 | 97.7324 | 98.0660 | 88.3592 | 862 | 20 | 862 | 17 | 6 | 35.2941 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1813 | 97.7317 | 92.7606 | 85.9802 | 10556 | 245 | 10635 | 830 | 248 | 29.8795 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9422 | 97.7317 | 98.1536 | 61.1398 | 15683 | 364 | 15682 | 295 | 284 | 96.2712 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | * | 98.0599 | 97.7308 | 98.3912 | 69.8054 | 70760 | 1643 | 70762 | 1157 | 328 | 28.3492 | |
| ndellapenna-hhga | INDEL | * | segdup | * | 97.8664 | 97.7308 | 98.0024 | 98.7178 | 2498 | 58 | 2502 | 51 | 37 | 72.5490 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4907 | 97.7292 | 99.2642 | 69.7423 | 28060 | 652 | 28060 | 208 | 16 | 7.6923 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4907 | 97.7292 | 99.2642 | 69.7423 | 28060 | 652 | 28060 | 208 | 16 | 7.6923 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | homalt | 98.6471 | 97.7290 | 99.5827 | 86.9731 | 2625 | 61 | 2625 | 11 | 8 | 72.7273 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | * | 97.2516 | 97.7288 | 96.7791 | 88.9718 | 4475 | 104 | 4477 | 149 | 18 | 12.0805 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | het | 98.6886 | 97.7286 | 99.6676 | 58.7142 | 9896 | 230 | 9895 | 33 | 5 | 15.1515 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | het | 93.4529 | 97.7284 | 89.5358 | 84.8427 | 12089 | 281 | 11996 | 1402 | 82 | 5.8488 | |
| asubramanian-gatk | SNP | tv | * | * | 98.7904 | 97.7276 | 99.8765 | 24.3508 | 947655 | 22035 | 947577 | 1172 | 61 | 5.2048 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9458 | 97.7276 | 98.1651 | 56.3127 | 31265 | 727 | 31189 | 583 | 575 | 98.6278 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 95.8387 | 97.7273 | 94.0217 | 94.6543 | 172 | 4 | 173 | 11 | 2 | 18.1818 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5775 | 97.7273 | 95.4545 | 93.6232 | 43 | 1 | 42 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 93.3140 | 43 | 1 | 43 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8506 | 97.7273 | 100.0000 | 74.7059 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-dragen | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 41.8919 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 47.5610 | 43 | 1 | 43 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7109 | 97.7273 | 97.6945 | 90.0086 | 172 | 4 | 339 | 8 | 5 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 89.5631 | 43 | 1 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 90.5286 | 43 | 1 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 94.5691 | 43 | 1 | 43 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 48.1928 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 47.5610 | 43 | 1 | 43 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.3396 | 43 | 1 | 43 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | het | 94.5055 | 97.7273 | 91.4894 | 52.0408 | 43 | 1 | 43 | 4 | 0 | 0.0000 | |