PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20901-20950 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | het | 98.7730 | 97.9203 | 99.6406 | 81.1953 | 4991 | 106 | 4991 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.3231 | 97.9202 | 94.7773 | 65.7410 | 14313 | 304 | 13937 | 768 | 672 | 87.5000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5540 | 97.9189 | 99.1972 | 85.2279 | 894 | 19 | 865 | 7 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | * | * | 98.2389 | 97.9189 | 98.5610 | 55.8987 | 25549 | 543 | 25548 | 373 | 340 | 91.1528 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | het | 94.0644 | 97.9179 | 90.5028 | 86.3515 | 1646 | 35 | 1620 | 170 | 113 | 66.4706 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9723 | 97.9176 | 88.5025 | 64.8041 | 2163 | 46 | 2163 | 281 | 274 | 97.5089 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | het | 97.6690 | 97.9167 | 97.4227 | 90.2951 | 188 | 4 | 189 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4293 | 97.9167 | 98.9474 | 87.9975 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4320 | 97.9167 | 98.9529 | 88.7448 | 188 | 4 | 189 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.3297 | 97.9167 | 94.7933 | 63.6617 | 2491 | 53 | 2476 | 136 | 15 | 11.0294 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7510 | 97.9167 | 99.5997 | 47.1770 | 2491 | 53 | 2488 | 10 | 1 | 10.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.4103 | 97.9167 | 94.9495 | 46.7742 | 188 | 4 | 188 | 10 | 9 | 90.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 95.2090 | 97.9167 | 92.6471 | 93.7748 | 188 | 4 | 189 | 15 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4293 | 97.9167 | 98.9474 | 40.2516 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | hetalt | 98.9474 | 97.9167 | 100.0000 | 96.6403 | 47 | 1 | 51 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | * | homalt | 96.8456 | 97.9163 | 95.7981 | 48.3646 | 6109 | 130 | 6110 | 268 | 230 | 85.8209 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6157 | 97.9161 | 99.3253 | 64.1874 | 3383 | 72 | 3386 | 23 | 21 | 91.3043 | |
| cchapple-custom | SNP | tv | map_l100_m2_e1 | * | 97.2075 | 97.9156 | 96.5096 | 71.7543 | 24756 | 527 | 24747 | 895 | 134 | 14.9721 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e0 | het | 91.3175 | 97.9152 | 85.5528 | 92.0328 | 1362 | 29 | 1362 | 230 | 74 | 32.1739 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e0 | homalt | 98.7237 | 97.9151 | 99.5458 | 87.7612 | 2630 | 56 | 2630 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | SNP | * | map_l125_m1_e0 | het | 94.0558 | 97.9149 | 90.4894 | 82.0185 | 27800 | 592 | 27478 | 2888 | 162 | 5.6094 | |
| hfeng-pmm1 | INDEL | * | map_siren | het | 98.4945 | 97.9148 | 99.0811 | 80.4769 | 4414 | 94 | 4421 | 41 | 3 | 7.3171 | |
| ckim-isaac | INDEL | D1_5 | segdup | * | 98.5851 | 97.9148 | 99.2647 | 92.9825 | 1080 | 23 | 1080 | 8 | 3 | 37.5000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6345 | 97.9145 | 99.3651 | 67.4587 | 939 | 20 | 939 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.5921 | 97.9143 | 93.3775 | 89.4196 | 845 | 18 | 846 | 60 | 5 | 8.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | het | 85.2663 | 97.9135 | 75.5126 | 92.7832 | 1924 | 41 | 1915 | 621 | 13 | 2.0934 | |
| gduggal-bwaplat | SNP | * | * | homalt | 98.9364 | 97.9135 | 99.9810 | 18.7279 | 1155537 | 24624 | 1155217 | 220 | 194 | 88.1818 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4489 | 97.9134 | 98.9903 | 69.4877 | 29844 | 636 | 29412 | 300 | 222 | 74.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4489 | 97.9134 | 98.9903 | 69.4877 | 29844 | 636 | 29412 | 300 | 222 | 74.0000 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7958 | 97.9116 | 99.6962 | 48.3747 | 3610 | 77 | 3610 | 11 | 9 | 81.8182 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.5411 | 97.9111 | 97.1738 | 70.8692 | 2953 | 63 | 2957 | 86 | 7 | 8.1395 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.3647 | 97.9109 | 89.2219 | 85.2038 | 1781 | 38 | 1548 | 187 | 133 | 71.1230 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.3647 | 97.9109 | 89.2219 | 85.2038 | 1781 | 38 | 1548 | 187 | 133 | 71.1230 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | * | 98.7976 | 97.9108 | 99.7006 | 72.0168 | 18980 | 405 | 18980 | 57 | 29 | 50.8772 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | het | 98.4127 | 97.9096 | 98.9210 | 71.8623 | 4309 | 92 | 4309 | 47 | 14 | 29.7872 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3820 | 97.9096 | 98.8590 | 53.4408 | 5480 | 117 | 13083 | 151 | 132 | 87.4172 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e1 | het | 94.2043 | 97.9082 | 90.7704 | 83.1773 | 29020 | 620 | 28678 | 2916 | 165 | 5.6584 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | * | 97.6949 | 97.9079 | 97.4828 | 88.4422 | 702 | 15 | 852 | 22 | 12 | 54.5455 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9763 | 97.9079 | 98.0447 | 88.3293 | 702 | 15 | 702 | 14 | 4 | 28.5714 | |
| jlack-gatk | SNP | * | map_l250_m2_e0 | * | 93.5078 | 97.9074 | 89.4865 | 92.8768 | 7720 | 165 | 7720 | 907 | 67 | 7.3870 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7471 | 97.9048 | 99.6040 | 63.8511 | 514 | 11 | 503 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | * | het | 92.3399 | 97.9037 | 87.3745 | 56.6927 | 11349 | 243 | 11924 | 1723 | 1642 | 95.2989 | |