PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20851-20900 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0040 | 97.9339 | 98.0743 | 85.2983 | 711 | 15 | 713 | 14 | 3 | 21.4286 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.7500 | 97.9339 | 99.5798 | 88.4466 | 237 | 5 | 237 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9562 | 97.9339 | 100.0000 | 69.3299 | 237 | 5 | 238 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.7995 | 97.9339 | 99.6807 | 49.2515 | 31331 | 661 | 31528 | 101 | 86 | 85.1485 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5464 | 97.9339 | 99.1667 | 69.3878 | 237 | 5 | 238 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5447 | 97.9339 | 99.1632 | 90.1240 | 237 | 5 | 237 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3133 | 97.9336 | 98.6960 | 78.2485 | 1327 | 28 | 1211 | 16 | 12 | 75.0000 | |
| jmaeng-gatk | SNP | * | * | hetalt | 98.6127 | 97.9334 | 99.3015 | 55.2138 | 853 | 18 | 853 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | SNP | tv | * | hetalt | 98.6127 | 97.9334 | 99.3015 | 55.2138 | 853 | 18 | 853 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.6795 | 97.9333 | 77.7454 | 76.6397 | 2938 | 62 | 2938 | 841 | 597 | 70.9869 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | homalt | 98.7971 | 97.9332 | 99.6764 | 93.3875 | 616 | 13 | 616 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | homalt | 98.5600 | 97.9332 | 99.1948 | 91.6845 | 616 | 13 | 616 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | I6_15 | * | homalt | 96.9232 | 97.9324 | 95.9347 | 48.1653 | 6110 | 129 | 6112 | 259 | 222 | 85.7143 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.3404 | 97.9322 | 98.7521 | 81.2217 | 1184 | 25 | 1187 | 15 | 3 | 20.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2458 | 97.9315 | 96.5697 | 82.2940 | 19174 | 405 | 19284 | 685 | 59 | 8.6131 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2458 | 97.9315 | 96.5697 | 82.2940 | 19174 | 405 | 19284 | 685 | 59 | 8.6131 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.4982 | 97.9310 | 99.0719 | 86.7466 | 852 | 18 | 854 | 8 | 3 | 37.5000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3834 | 97.9310 | 98.8399 | 66.3544 | 426 | 9 | 426 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.3621 | 97.9299 | 98.7981 | 81.8710 | 1230 | 26 | 1233 | 15 | 3 | 20.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | * | 95.0540 | 97.9288 | 92.3431 | 80.3827 | 16312 | 345 | 16257 | 1348 | 74 | 5.4896 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 92.5983 | 189 | 4 | 189 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | ti | HG002compoundhet | hetalt | 98.9529 | 97.9275 | 100.0000 | 22.2222 | 567 | 12 | 567 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | * | het | 98.6365 | 97.9268 | 99.3566 | 49.5505 | 9825 | 208 | 19457 | 126 | 91 | 72.2222 | |
| ltrigg-rtg1 | INDEL | * | segdup | * | 98.6010 | 97.9264 | 99.2849 | 92.9892 | 2503 | 53 | 2499 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | * | 97.8272 | 97.9257 | 97.7289 | 86.7675 | 1133 | 24 | 1377 | 32 | 17 | 53.1250 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 54.3229 | 97.9257 | 37.5868 | 83.5805 | 4060 | 86 | 4112 | 6828 | 99 | 1.4499 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6320 | 97.9249 | 99.3493 | 69.0808 | 1982 | 42 | 1985 | 13 | 5 | 38.4615 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.4121 | 97.9243 | 98.9048 | 46.8296 | 17880 | 379 | 17881 | 198 | 194 | 97.9798 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.9275 | 97.9239 | 97.9310 | 91.1206 | 283 | 6 | 284 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | * | 97.0408 | 97.9239 | 96.1735 | 91.2206 | 283 | 6 | 377 | 15 | 8 | 53.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m0_e0 | * | 95.6081 | 97.9239 | 93.3993 | 94.3364 | 283 | 6 | 283 | 20 | 1 | 5.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4236 | 97.9239 | 96.9283 | 92.3837 | 283 | 6 | 284 | 9 | 1 | 11.1111 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.0936 | 97.9239 | 98.2639 | 75.8186 | 283 | 6 | 283 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 89.7284 | 97.9239 | 82.7988 | 93.2798 | 283 | 6 | 284 | 59 | 1 | 1.6949 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 97.5862 | 97.9239 | 97.2509 | 90.5458 | 283 | 6 | 283 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 94.0364 | 97.9239 | 90.4459 | 94.1809 | 283 | 6 | 284 | 30 | 1 | 3.3333 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | * | 95.3410 | 97.9233 | 92.8914 | 88.4293 | 3678 | 78 | 3685 | 282 | 30 | 10.6383 | |
| qzeng-custom | INDEL | I1_5 | segdup | * | 97.9371 | 97.9226 | 97.9516 | 94.4656 | 1037 | 22 | 1052 | 22 | 8 | 36.3636 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.2359 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.3046 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| astatham-gatk | SNP | ti | segdup | het | 98.8338 | 97.9219 | 99.7628 | 90.8470 | 11780 | 250 | 11778 | 28 | 2 | 7.1429 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | homalt | 98.7417 | 97.9210 | 99.5763 | 84.9490 | 471 | 10 | 470 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | het | 94.4212 | 97.9207 | 91.1633 | 92.2470 | 5086 | 108 | 5086 | 493 | 83 | 16.8357 | |