PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20751-20800 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5300 | 97.9644 | 99.1021 | 62.8102 | 5727 | 119 | 5629 | 51 | 17 | 33.3333 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.9070 | 97.9644 | 99.8679 | 59.9259 | 770 | 16 | 756 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | het | 98.7963 | 97.9633 | 99.6436 | 50.7412 | 15103 | 314 | 15098 | 54 | 2 | 3.7037 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e0 | het | 97.5246 | 97.9627 | 97.0903 | 84.4521 | 2260 | 47 | 2269 | 68 | 29 | 42.6471 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7692 | 97.9625 | 99.5893 | 34.5018 | 24040 | 500 | 24005 | 99 | 66 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8200 | 97.9622 | 99.6930 | 47.9840 | 1346 | 28 | 19485 | 60 | 60 | 100.0000 | |
| gduggal-bwavard | SNP | ti | segdup | homalt | 98.7626 | 97.9614 | 99.5771 | 88.2815 | 7352 | 153 | 7300 | 31 | 30 | 96.7742 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.4699 | 97.9603 | 96.9843 | 55.7493 | 19787 | 412 | 20132 | 626 | 469 | 74.9201 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | het | 92.8051 | 97.9602 | 88.1654 | 84.8061 | 18922 | 394 | 18699 | 2510 | 124 | 4.9402 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | * | 98.0711 | 97.9600 | 98.1825 | 89.6431 | 2593 | 54 | 2593 | 48 | 11 | 22.9167 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 80.9524 | 48 | 1 | 48 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.8182 | 48 | 1 | 48 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 91.6667 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.1024 | 48 | 1 | 48 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | het | 93.2039 | 97.9592 | 88.8889 | 91.7808 | 48 | 1 | 48 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.3756 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.7778 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 91.9255 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | het | 96.7919 | 97.9592 | 95.6522 | 91.2548 | 48 | 1 | 66 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6740 | 97.9592 | 99.3994 | 83.4739 | 336 | 7 | 331 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | segdup | * | 98.6033 | 97.9585 | 99.2566 | 93.9219 | 27494 | 573 | 27505 | 206 | 20 | 9.7087 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | het | 98.9180 | 97.9581 | 99.8969 | 54.5187 | 20341 | 424 | 20346 | 21 | 14 | 66.6667 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8879 | 97.9575 | 99.8361 | 58.2906 | 1199 | 25 | 1218 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.2968 | 97.9570 | 98.6388 | 79.3252 | 6521 | 136 | 6522 | 90 | 41 | 45.5556 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | het | 97.0529 | 97.9557 | 96.1667 | 90.6074 | 575 | 12 | 577 | 23 | 2 | 8.6957 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2748 | 97.9551 | 96.6038 | 68.7500 | 1485 | 31 | 1536 | 54 | 2 | 3.7037 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5399 | 97.9550 | 97.1282 | 57.0303 | 7233 | 151 | 7204 | 213 | 194 | 91.0798 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.0005 | 97.9533 | 59.4604 | 43.3923 | 10194 | 213 | 10226 | 6972 | 6772 | 97.1314 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8731 | 97.9527 | 93.8800 | 90.3027 | 1531 | 32 | 1534 | 100 | 9 | 9.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | * | 98.9109 | 97.9517 | 99.8891 | 36.4634 | 17120 | 358 | 17120 | 19 | 17 | 89.4737 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1731 | 97.9516 | 98.3956 | 52.7295 | 10855 | 227 | 10855 | 177 | 173 | 97.7401 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | het | 97.4787 | 97.9513 | 97.0105 | 84.5478 | 2295 | 48 | 2304 | 71 | 31 | 43.6620 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5298 | 97.9511 | 80.7619 | 65.1199 | 4207 | 88 | 4219 | 1005 | 39 | 3.8806 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5510 | 97.9508 | 97.1545 | 69.9817 | 478 | 10 | 478 | 14 | 12 | 85.7143 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5380 | 97.9508 | 99.1323 | 82.5906 | 478 | 10 | 457 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | het | 96.3724 | 97.9506 | 94.8442 | 74.2096 | 10228 | 214 | 10228 | 556 | 207 | 37.2302 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | * | 95.0420 | 97.9501 | 92.3015 | 80.3208 | 16151 | 338 | 16102 | 1343 | 73 | 5.4356 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4900 | 97.9500 | 77.4308 | 59.1746 | 2389 | 50 | 2405 | 701 | 19 | 2.7104 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |