PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20651-20700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9050 | 97.9929 | 99.8342 | 48.4986 | 3613 | 74 | 3613 | 6 | 3 | 50.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3012 | 97.9926 | 98.6117 | 39.2636 | 17818 | 365 | 17829 | 251 | 187 | 74.5020 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | * | 95.3278 | 97.9922 | 92.8044 | 87.6441 | 3514 | 72 | 3521 | 273 | 26 | 9.5238 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | het | 98.9112 | 97.9918 | 99.8479 | 54.6492 | 20348 | 417 | 20351 | 31 | 19 | 61.2903 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1771 | 97.9914 | 98.3635 | 52.4340 | 35857 | 735 | 35764 | 595 | 553 | 92.9412 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8001 | 97.9911 | 97.6098 | 69.6269 | 1756 | 36 | 1756 | 43 | 31 | 72.0930 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9637 | 97.9911 | 97.9364 | 69.6975 | 1756 | 36 | 1756 | 37 | 31 | 83.7838 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | het | 97.7378 | 97.9897 | 97.4872 | 91.2583 | 1901 | 39 | 1901 | 49 | 9 | 18.3673 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0898 | 97.9887 | 98.1912 | 83.7299 | 1900 | 39 | 1900 | 35 | 13 | 37.1429 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6413 | 97.9883 | 99.3029 | 72.0487 | 92549 | 1900 | 92457 | 649 | 588 | 90.6009 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4833 | 97.9879 | 98.9837 | 87.1170 | 487 | 10 | 487 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e0 | het | 98.1887 | 97.9879 | 98.3903 | 88.1186 | 487 | 10 | 489 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 96.5410 | 97.9879 | 95.1362 | 92.5138 | 487 | 10 | 489 | 25 | 1 | 4.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 94.4890 | 97.9879 | 91.2313 | 91.8168 | 487 | 10 | 489 | 47 | 3 | 6.3830 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3863 | 97.9879 | 98.7879 | 88.9681 | 487 | 10 | 489 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 93.3626 | 97.9878 | 89.1544 | 38.6200 | 7207 | 148 | 7201 | 876 | 61 | 6.9635 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | * | 98.5661 | 97.9875 | 99.1515 | 75.2029 | 4090 | 84 | 4090 | 35 | 10 | 28.5714 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | * | 92.3966 | 97.9875 | 87.4091 | 87.6580 | 4090 | 84 | 4089 | 589 | 40 | 6.7912 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2696 | 97.9874 | 96.5623 | 64.0273 | 12269 | 252 | 13595 | 484 | 266 | 54.9587 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | het | 98.3415 | 97.9871 | 98.6985 | 86.8786 | 1363 | 28 | 1365 | 18 | 4 | 22.2222 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8721 | 97.9866 | 99.7738 | 42.6347 | 2628 | 54 | 2646 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | het | 93.0515 | 97.9865 | 88.5898 | 85.8074 | 19953 | 410 | 19713 | 2539 | 128 | 5.0414 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.6782 | 97.9861 | 97.3722 | 73.2523 | 1411 | 29 | 1371 | 37 | 5 | 13.5135 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9677 | 97.9853 | 99.9699 | 67.4084 | 16633 | 342 | 16633 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9677 | 97.9853 | 99.9699 | 67.4084 | 16633 | 342 | 16633 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4696 | 97.9853 | 95.0000 | 72.7838 | 535 | 11 | 665 | 35 | 35 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8202 | 97.9852 | 99.6695 | 59.8782 | 17800 | 366 | 17792 | 59 | 52 | 88.1356 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8202 | 97.9852 | 99.6695 | 59.8782 | 17800 | 366 | 17792 | 59 | 52 | 88.1356 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3403 | 97.9849 | 98.6982 | 87.4181 | 778 | 16 | 834 | 11 | 9 | 81.8182 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4861 | 97.9849 | 98.9924 | 89.4091 | 778 | 16 | 786 | 8 | 7 | 87.5000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | * | 97.9875 | 97.9847 | 97.9903 | 91.3313 | 1410 | 29 | 1414 | 29 | 7 | 24.1379 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7568 | 97.9839 | 97.5309 | 89.9783 | 243 | 5 | 316 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 88.3666 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 90.0770 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.4304 | 97.9839 | 98.8810 | 71.7122 | 972 | 20 | 972 | 11 | 2 | 18.1818 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | * | 97.5300 | 97.9838 | 97.0805 | 69.8683 | 24007 | 494 | 24008 | 722 | 232 | 32.1330 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0078 | 97.9824 | 98.0331 | 65.1766 | 1894 | 39 | 1894 | 38 | 36 | 94.7368 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0078 | 97.9824 | 98.0331 | 65.1766 | 1894 | 39 | 1894 | 38 | 36 | 94.7368 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | het | 94.4176 | 97.9823 | 91.1032 | 89.6399 | 777 | 16 | 768 | 75 | 36 | 48.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | het | 98.5410 | 97.9823 | 99.1060 | 84.5073 | 777 | 16 | 776 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5858 | 97.9822 | 99.1968 | 53.1729 | 15442 | 318 | 15438 | 125 | 48 | 38.4000 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | * | 97.9486 | 97.9821 | 97.9151 | 90.7142 | 1311 | 27 | 1315 | 28 | 6 | 21.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8475 | 97.9811 | 99.7293 | 70.4300 | 32565 | 671 | 32421 | 88 | 29 | 32.9545 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8422 | 97.9805 | 99.7191 | 81.0931 | 6744 | 139 | 6744 | 19 | 10 | 52.6316 | |