PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18101-18150 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 87.8840 | 72 | 1 | 71 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1034 | 98.6295 | 99.5819 | 70.6519 | 63548 | 883 | 64304 | 270 | 244 | 90.3704 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | * | 98.8139 | 98.6292 | 98.9993 | 88.0247 | 7123 | 99 | 7123 | 72 | 16 | 22.2222 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2247 | 98.6289 | 99.8277 | 67.0916 | 30716 | 427 | 30716 | 53 | 3 | 5.6604 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2247 | 98.6289 | 99.8277 | 67.0916 | 30716 | 427 | 30716 | 53 | 3 | 5.6604 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | het | 98.2477 | 98.6282 | 97.8701 | 83.2230 | 2804 | 39 | 2803 | 61 | 3 | 4.9180 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | het | 94.6019 | 98.6282 | 90.8914 | 86.7158 | 2804 | 39 | 2804 | 281 | 52 | 18.5053 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002complexvar | * | 99.1020 | 98.6275 | 99.5810 | 54.4390 | 32266 | 449 | 32088 | 135 | 85 | 62.9630 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.7253 | 98.6270 | 91.1205 | 47.0917 | 431 | 6 | 431 | 42 | 42 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.4540 | 98.6270 | 88.7967 | 40.4203 | 431 | 6 | 428 | 54 | 54 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4727 | 98.6270 | 80.2142 | 81.5986 | 1724 | 24 | 1723 | 425 | 22 | 5.1765 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | het | 97.4217 | 98.6269 | 96.2456 | 76.6277 | 13791 | 192 | 13792 | 538 | 130 | 24.1636 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.1713 | 98.6264 | 99.7222 | 85.0436 | 359 | 5 | 359 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | HG002complexvar | homalt | 99.3008 | 98.6263 | 99.9845 | 20.0307 | 284610 | 3964 | 284586 | 44 | 39 | 88.6364 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1804 | 98.6259 | 99.7411 | 70.8758 | 45074 | 628 | 45075 | 117 | 14 | 11.9658 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1804 | 98.6259 | 99.7411 | 70.8758 | 45074 | 628 | 45075 | 117 | 14 | 11.9658 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | * | 99.1825 | 98.6258 | 99.7454 | 56.6822 | 24689 | 344 | 24684 | 63 | 5 | 7.9365 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0352 | 98.6256 | 93.5774 | 85.8273 | 1794 | 25 | 1559 | 107 | 85 | 79.4393 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.0352 | 98.6256 | 93.5774 | 85.8273 | 1794 | 25 | 1559 | 107 | 85 | 79.4393 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.5003 | 98.6256 | 94.4647 | 86.9451 | 1794 | 25 | 1553 | 91 | 38 | 41.7582 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.5003 | 98.6256 | 94.4647 | 86.9451 | 1794 | 25 | 1553 | 91 | 38 | 41.7582 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | homalt | 73.8232 | 98.6254 | 58.9888 | 82.3150 | 287 | 4 | 210 | 146 | 141 | 96.5753 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | homalt | 90.5363 | 98.6254 | 83.6735 | 73.7366 | 287 | 4 | 287 | 56 | 56 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | * | hetalt | 98.7952 | 98.6254 | 98.9655 | 47.9354 | 574 | 8 | 574 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 82.7119 | 502 | 7 | 502 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.3350 | 98.6248 | 98.0469 | 84.7483 | 502 | 7 | 502 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_siren | het | 97.3536 | 98.6247 | 96.1148 | 86.8437 | 4446 | 62 | 4453 | 180 | 15 | 8.3333 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1836 | 98.6234 | 99.7502 | 77.6187 | 6018 | 84 | 5989 | 15 | 7 | 46.6667 | |
| cchapple-custom | SNP | tv | map_siren | het | 97.1514 | 98.6228 | 95.7232 | 66.6384 | 28215 | 394 | 28291 | 1264 | 181 | 14.3196 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2870 | 98.6226 | 97.9536 | 88.0013 | 716 | 10 | 718 | 15 | 2 | 13.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8986 | 98.6225 | 99.1763 | 52.8592 | 2649 | 37 | 2649 | 22 | 1 | 4.5455 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | het | 96.9467 | 98.6218 | 95.3275 | 45.8199 | 9374 | 131 | 9446 | 463 | 78 | 16.8467 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5322 | 98.6213 | 98.4432 | 87.6162 | 1073 | 15 | 1075 | 17 | 4 | 23.5294 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | het | 97.5182 | 98.6211 | 96.4396 | 82.0747 | 7152 | 100 | 7151 | 264 | 17 | 6.4394 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2818 | 98.6207 | 97.9452 | 69.3920 | 429 | 6 | 429 | 9 | 4 | 44.4444 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2966 | 98.6207 | 96.0076 | 71.3508 | 429 | 6 | 505 | 21 | 6 | 28.5714 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8479 | 98.6207 | 99.0762 | 86.8887 | 858 | 12 | 858 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8490 | 98.6207 | 99.0783 | 85.5790 | 858 | 12 | 860 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1693 | 98.6207 | 97.7221 | 69.8074 | 429 | 6 | 429 | 10 | 4 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.7342 | 98.6207 | 98.8479 | 87.4221 | 858 | 12 | 858 | 10 | 2 | 20.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 97.6702 | 98.6207 | 96.7379 | 90.7511 | 858 | 12 | 860 | 29 | 3 | 10.3448 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.4033 | 98.6198 | 88.7109 | 85.7951 | 6788 | 95 | 6813 | 867 | 96 | 11.0727 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |
| qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | hetalt | 99.3043 | 98.6183 | 100.0000 | 23.0458 | 571 | 8 | 571 | 0 | 0 | ||