PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17851-17900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.9629 | 98.6871 | 93.3851 | 38.4673 | 2255 | 30 | 2287 | 162 | 154 | 95.0617 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2568 | 98.6869 | 99.8334 | 39.3004 | 10221 | 136 | 10186 | 17 | 16 | 94.1176 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6237 | 98.6866 | 98.5609 | 63.0877 | 3231 | 43 | 3219 | 47 | 44 | 93.6170 | |
| bgallagher-sentieon | SNP | ti | map_l250_m0_e0 | * | 98.1132 | 98.6861 | 97.5469 | 93.1376 | 1352 | 18 | 1352 | 34 | 7 | 20.5882 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | het | 98.5889 | 98.6861 | 98.4920 | 74.2606 | 18026 | 240 | 18026 | 276 | 77 | 27.8986 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.2180 | 98.6853 | 93.8711 | 58.0279 | 16213 | 216 | 34875 | 2277 | 1868 | 82.0378 | |
| asubramanian-gatk | INDEL | * | * | het | 98.9698 | 98.6849 | 99.2562 | 61.7813 | 191580 | 2553 | 191238 | 1433 | 589 | 41.1026 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | het | 97.5576 | 98.6846 | 96.4561 | 76.6502 | 7127 | 95 | 7131 | 262 | 21 | 8.0153 | |
| ckim-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.8193 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 88.1053 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.2683 | 75 | 1 | 75 | 0 | 0 | ||
| cchapple-custom | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.0698 | 75 | 1 | 79 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.2626 | 98.6842 | 97.8446 | 62.1511 | 1725 | 23 | 1725 | 38 | 1 | 2.6316 | |
| astatham-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.5455 | 75 | 1 | 75 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 91.7481 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.8193 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 88.1053 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.9767 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 86.5075 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9747 | 98.6842 | 99.2669 | 82.6860 | 1350 | 18 | 1354 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 49.3333 | 75 | 1 | 75 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 53.9877 | 75 | 1 | 75 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | * | 98.0392 | 98.6842 | 97.4026 | 50.0000 | 75 | 1 | 75 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0560 | 98.6830 | 99.4318 | 77.2512 | 1049 | 14 | 1050 | 6 | 2 | 33.3333 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9696 | 98.6829 | 99.2581 | 73.7654 | 93205 | 1244 | 93112 | 696 | 583 | 83.7644 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | het | 99.1904 | 98.6828 | 99.7032 | 70.4601 | 10414 | 139 | 10414 | 31 | 12 | 38.7097 | |
| mlin-fermikit | SNP | tv | func_cds | het | 99.1679 | 98.6827 | 99.6579 | 21.9982 | 2622 | 35 | 2622 | 9 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | * | 96.1985 | 98.6826 | 93.8363 | 83.3002 | 20450 | 273 | 20446 | 1343 | 127 | 9.4564 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | homalt | 98.9952 | 98.6820 | 99.3103 | 43.9072 | 1198 | 16 | 1152 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | * | func_cds | homalt | 99.3365 | 98.6818 | 100.0000 | 18.1191 | 6887 | 92 | 6887 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_siren | homalt | 98.7934 | 98.6817 | 98.9052 | 79.7136 | 2620 | 35 | 2620 | 29 | 20 | 68.9655 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4994 | 98.6817 | 98.3178 | 90.3967 | 524 | 7 | 526 | 9 | 2 | 22.2222 | |
| gduggal-snapplat | SNP | * | * | * | 99.0030 | 98.6815 | 99.3266 | 26.8746 | 3014360 | 40274 | 3015151 | 20442 | 2819 | 13.7902 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.5617 | 98.6804 | 88.9479 | 75.7364 | 16751 | 224 | 16756 | 2082 | 698 | 33.5255 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.5617 | 98.6804 | 88.9479 | 75.7364 | 16751 | 224 | 16756 | 2082 | 698 | 33.5255 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2913 | 98.6803 | 99.9099 | 43.4022 | 6655 | 89 | 6655 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | homalt | 98.0751 | 98.6799 | 97.4776 | 83.6569 | 1196 | 16 | 1198 | 31 | 13 | 41.9355 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1530 | 98.6794 | 99.6313 | 77.5757 | 1345 | 18 | 1351 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | * | 99.2480 | 98.6784 | 99.8242 | 55.9018 | 48831 | 654 | 48833 | 86 | 19 | 22.0930 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9711 | 98.6779 | 99.2660 | 59.5335 | 8285 | 111 | 8250 | 61 | 52 | 85.2459 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7999 | 98.6779 | 98.9222 | 68.1958 | 5523 | 74 | 5507 | 60 | 53 | 88.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4385 | 98.6779 | 96.2299 | 81.4052 | 6792 | 91 | 6815 | 267 | 17 | 6.3670 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1076 | 98.6776 | 99.5414 | 71.9967 | 93200 | 1249 | 93118 | 429 | 358 | 83.4499 | |