PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17451-17500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | tv | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | het | 98.0666 | 98.7652 | 97.3778 | 90.6744 | 5199 | 65 | 5199 | 140 | 25 | 17.8571 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4797 | 98.7648 | 86.9467 | 79.4810 | 1999 | 25 | 1925 | 289 | 9 | 3.1142 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8329 | 98.7645 | 85.8105 | 79.7572 | 5356 | 67 | 5352 | 885 | 251 | 28.3616 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8329 | 98.7645 | 85.8105 | 79.7572 | 5356 | 67 | 5352 | 885 | 251 | 28.3616 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9092 | 98.7644 | 97.0687 | 69.5742 | 27336 | 342 | 27419 | 828 | 294 | 35.5072 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e0 | het | 99.1127 | 98.7632 | 99.4646 | 75.9700 | 19884 | 249 | 19878 | 107 | 27 | 25.2336 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | het | 99.1170 | 98.7630 | 99.4736 | 76.1158 | 12854 | 161 | 12850 | 68 | 17 | 25.0000 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | het | 97.5046 | 98.7630 | 96.2780 | 81.6768 | 12854 | 161 | 12856 | 497 | 54 | 10.8652 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2313 | 98.7627 | 99.7044 | 62.6862 | 1357 | 17 | 1349 | 4 | 1 | 25.0000 | |
| anovak-vg | SNP | ti | * | homalt | 99.1281 | 98.7623 | 99.4967 | 15.3503 | 793100 | 9939 | 790097 | 3997 | 3582 | 89.6172 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0806 | 98.7622 | 99.4012 | 57.1167 | 1117 | 14 | 1162 | 7 | 7 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9023 | 98.7622 | 99.0427 | 58.2117 | 3830 | 48 | 3828 | 37 | 32 | 86.4865 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2346 | 98.7619 | 99.7118 | 60.6427 | 1037 | 13 | 1038 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1368 | 98.7619 | 99.5146 | 57.7002 | 1037 | 13 | 1025 | 5 | 4 | 80.0000 | |
| ckim-vqsr | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1361 | 98.7615 | 99.5135 | 67.2304 | 4705 | 59 | 4705 | 23 | 10 | 43.4783 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | * | 97.9668 | 98.7606 | 97.1856 | 77.0392 | 46617 | 585 | 46617 | 1350 | 276 | 20.4444 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 86.5697 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 88.7006 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 88.7331 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9665 | 98.7603 | 99.1736 | 69.4830 | 239 | 3 | 240 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2719 | 98.7603 | 99.7888 | 58.8261 | 956 | 12 | 945 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 88.7006 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 85.9155 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3763 | 98.7603 | 100.0000 | 67.6113 | 239 | 3 | 240 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 98.4902 | 98.7603 | 98.2216 | 85.1332 | 717 | 9 | 718 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 87.3284 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3763 | 98.7603 | 100.0000 | 65.6160 | 239 | 3 | 240 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3763 | 98.7603 | 100.0000 | 63.6228 | 239 | 3 | 243 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9786 | 98.7603 | 91.4758 | 91.3901 | 717 | 9 | 719 | 67 | 4 | 5.9702 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7390 | 98.7601 | 98.7179 | 73.4197 | 1593 | 20 | 1540 | 20 | 15 | 75.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1207 | 98.7596 | 99.4845 | 63.9164 | 4777 | 60 | 4825 | 25 | 19 | 76.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0274 | 98.7593 | 93.4426 | 89.0578 | 1194 | 15 | 1197 | 84 | 6 | 7.1429 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9430 | 98.7588 | 99.1279 | 78.7129 | 2387 | 30 | 2387 | 21 | 17 | 80.9524 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | het | 94.4229 | 98.7586 | 90.4519 | 56.9085 | 14002 | 176 | 5845 | 617 | 93 | 15.0729 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | het | 99.2602 | 98.7583 | 99.7671 | 71.8965 | 18850 | 237 | 18850 | 44 | 16 | 36.3636 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | het | 97.5203 | 98.7579 | 96.3134 | 81.5763 | 12721 | 160 | 12723 | 487 | 52 | 10.6776 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | het | 99.1156 | 98.7579 | 99.4759 | 76.0299 | 12721 | 160 | 12717 | 67 | 17 | 25.3731 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.4646 | 98.7578 | 72.2727 | 35.4839 | 159 | 2 | 159 | 61 | 61 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.9050 | 98.7578 | 72.9358 | 36.8116 | 159 | 2 | 159 | 59 | 59 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.6842 | 98.7578 | 72.6027 | 36.7052 | 159 | 2 | 159 | 60 | 60 | 100.0000 | |