PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17401-17450 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3832 | 98.7739 | 100.0000 | 75.8608 | 3867 | 48 | 3884 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1121 | 98.7732 | 95.5059 | 60.7561 | 8293 | 103 | 8288 | 390 | 362 | 92.8205 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e0 | het | 96.9127 | 98.7732 | 95.1210 | 82.9549 | 19886 | 247 | 19886 | 1020 | 198 | 19.4118 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | het | 98.9928 | 98.7730 | 99.2136 | 57.1040 | 45645 | 567 | 45545 | 361 | 319 | 88.3657 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | het | 99.1075 | 98.7728 | 99.4445 | 75.8631 | 7163 | 89 | 7161 | 40 | 10 | 25.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9409 | 98.7725 | 99.1098 | 44.1885 | 3621 | 45 | 3674 | 33 | 32 | 96.9697 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | * | 98.8658 | 98.7724 | 98.9593 | 94.1605 | 1046 | 13 | 1046 | 11 | 7 | 63.6364 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | * | 98.9565 | 98.7724 | 99.1412 | 93.0766 | 1046 | 13 | 1039 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | segdup | * | 98.8191 | 98.7724 | 98.8658 | 94.3109 | 1046 | 13 | 1046 | 12 | 6 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | segdup | het | 99.0763 | 98.7722 | 99.3823 | 94.1484 | 1448 | 18 | 1448 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6376 | 98.7722 | 98.5034 | 72.1591 | 724 | 9 | 724 | 11 | 7 | 63.6364 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | * | map_siren | * | 98.8132 | 98.7719 | 98.8544 | 81.7102 | 7319 | 91 | 7335 | 85 | 17 | 20.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2583 | 98.7709 | 99.7505 | 77.4015 | 6027 | 75 | 5998 | 15 | 5 | 33.3333 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9056 | 98.7705 | 99.0411 | 85.3443 | 723 | 9 | 723 | 7 | 4 | 57.1429 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.9321 | 98.7700 | 82.5458 | 58.4226 | 10600 | 132 | 10674 | 2257 | 114 | 5.0510 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8303 | 98.7700 | 98.8907 | 49.1114 | 2409 | 30 | 2407 | 27 | 22 | 81.4815 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | het | 98.6534 | 98.7699 | 98.5371 | 69.8191 | 13811 | 172 | 13808 | 205 | 2 | 0.9756 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7595 | 98.7696 | 96.7698 | 62.5065 | 27615 | 344 | 27711 | 925 | 281 | 30.3784 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | het | 97.0530 | 98.7692 | 95.3955 | 77.5266 | 20944 | 261 | 20946 | 1011 | 206 | 20.3759 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2017 | 98.7689 | 99.6382 | 66.9061 | 3851 | 48 | 3856 | 14 | 8 | 57.1429 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1194 | 98.7685 | 99.4729 | 66.0097 | 3208 | 40 | 3208 | 17 | 8 | 47.0588 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5688 | 98.7682 | 98.3702 | 77.3380 | 6575 | 82 | 6579 | 109 | 1 | 0.9174 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.3474 | 98.7681 | 99.9335 | 54.7798 | 6013 | 75 | 6013 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8674 | 98.7680 | 98.9669 | 64.2541 | 481 | 6 | 479 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | * | HG002complexvar | homalt | 98.4127 | 98.7679 | 98.0601 | 51.6191 | 26694 | 333 | 26841 | 531 | 325 | 61.2053 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | het | 98.0598 | 98.7678 | 97.3619 | 90.6085 | 5130 | 64 | 5130 | 139 | 25 | 17.9856 | |
| anovak-vg | SNP | tv | func_cds | homalt | 98.9685 | 98.7676 | 99.1701 | 25.0222 | 1683 | 21 | 1673 | 14 | 11 | 78.5714 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | het | 99.1153 | 98.7674 | 99.4657 | 76.0302 | 20112 | 251 | 20106 | 108 | 27 | 25.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.0477 | 98.7673 | 95.3869 | 67.3469 | 641 | 8 | 641 | 31 | 31 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4164 | 98.7673 | 96.1019 | 68.3886 | 641 | 8 | 641 | 26 | 26 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2686 | 98.7673 | 95.8146 | 68.2034 | 641 | 8 | 641 | 28 | 28 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.3424 | 98.7673 | 95.9581 | 68.3562 | 641 | 8 | 641 | 27 | 27 | 100.0000 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | * | 99.2678 | 98.7672 | 99.7735 | 49.6292 | 8813 | 110 | 8810 | 20 | 17 | 85.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | * | 98.7848 | 98.7671 | 98.8026 | 73.3692 | 19146 | 239 | 19143 | 232 | 9 | 3.8793 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9397 | 98.7667 | 99.1133 | 38.6843 | 11292 | 141 | 11289 | 101 | 1 | 0.9901 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3358 | 98.7667 | 99.9115 | 42.6185 | 11292 | 141 | 11289 | 10 | 2 | 20.0000 | |
| dgrover-gatk | SNP | * | map_l150_m0_e0 | het | 98.4616 | 98.7657 | 98.1593 | 84.6929 | 7842 | 98 | 7839 | 147 | 23 | 15.6463 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | het | 98.9659 | 98.7656 | 99.1670 | 68.7560 | 10001 | 125 | 10000 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | * | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_siren | hetalt | 98.7654 | 98.7654 | 98.7654 | 71.5789 | 80 | 1 | 80 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4218 | 98.7654 | 96.1142 | 48.1999 | 7360 | 92 | 7371 | 298 | 81 | 27.1812 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | het | 88.6113 | 98.7654 | 80.3504 | 90.3081 | 480 | 6 | 642 | 157 | 63 | 40.1274 | |
| eyeh-varpipe | SNP | * | map_siren | hetalt | 98.9320 | 98.7654 | 99.0991 | 70.0162 | 80 | 1 | 550 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | hetalt | 98.7001 | 98.7654 | 98.6348 | 72.7948 | 80 | 1 | 289 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||