PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16551-16600 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | * | 99.1367 | 98.9191 | 99.3552 | 75.1649 | 20499 | 224 | 20495 | 133 | 93 | 69.9248 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.1233 | 98.9189 | 97.3404 | 94.5285 | 183 | 2 | 183 | 5 | 1 | 20.0000 | |
| cchapple-custom | INDEL | * | * | het | 99.2026 | 98.9188 | 99.4881 | 58.0034 | 192034 | 2099 | 238847 | 1229 | 782 | 63.6290 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3551 | 98.9186 | 99.7954 | 49.2385 | 2927 | 32 | 2927 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4563 | 98.9185 | 100.0000 | 61.9839 | 1372 | 15 | 1372 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4563 | 98.9185 | 100.0000 | 62.5546 | 1372 | 15 | 1372 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3123 | 98.9185 | 99.7093 | 62.6392 | 1372 | 15 | 1372 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2048 | 98.9185 | 99.4928 | 63.7700 | 1372 | 15 | 1373 | 7 | 2 | 28.5714 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2554 | 98.9184 | 99.5947 | 75.9330 | 6585 | 72 | 6635 | 27 | 13 | 48.1481 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1608 | 98.9184 | 99.4045 | 76.5307 | 6036 | 66 | 6009 | 36 | 20 | 55.5556 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.6604 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | homalt | 98.9177 | 98.9177 | 98.9177 | 87.2411 | 457 | 5 | 457 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | * | 99.0792 | 98.9177 | 99.2412 | 80.6907 | 1828 | 20 | 1831 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | * | 99.1376 | 98.9177 | 99.3584 | 75.0879 | 20290 | 222 | 20286 | 131 | 93 | 70.9924 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.1005 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3495 | 98.9177 | 99.7849 | 42.8747 | 457 | 5 | 464 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | homalt | 98.8108 | 98.9177 | 98.7041 | 86.8354 | 457 | 5 | 457 | 6 | 3 | 50.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 27.8740 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 27.8740 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3297 | 98.9174 | 99.7455 | 57.3296 | 10964 | 120 | 10972 | 28 | 3 | 10.7143 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | * | 99.0966 | 98.9170 | 99.2769 | 81.5232 | 1918 | 21 | 1922 | 14 | 3 | 21.4286 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1835 | 98.9169 | 97.4610 | 70.8771 | 17626 | 193 | 17235 | 449 | 399 | 88.8641 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | het | 94.5873 | 98.9166 | 90.6210 | 86.3363 | 12874 | 141 | 12870 | 1332 | 118 | 8.8589 | |
| ckim-vqsr | SNP | tv | * | het | 99.3645 | 98.9162 | 99.8170 | 31.1430 | 585283 | 6413 | 585211 | 1073 | 39 | 3.6347 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.5728 | 98.9160 | 96.2656 | 77.1021 | 365 | 4 | 464 | 18 | 18 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4550 | 98.9160 | 100.0000 | 75.9184 | 365 | 4 | 354 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3088 | 98.9160 | 97.7090 | 68.8770 | 1095 | 12 | 853 | 20 | 10 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1863 | 98.9160 | 99.4580 | 80.5789 | 365 | 4 | 367 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | * | func_cds | het | 99.3878 | 98.9159 | 99.8643 | 18.4193 | 11040 | 121 | 11040 | 15 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | het | 99.3128 | 98.9158 | 99.7130 | 54.8506 | 78184 | 857 | 77471 | 223 | 56 | 25.1121 | |
| gduggal-snapplat | SNP | ti | * | * | 99.1814 | 98.9158 | 99.4485 | 24.4080 | 2062907 | 22611 | 2063333 | 11443 | 1808 | 15.8001 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7982 | 98.9157 | 98.6811 | 85.9241 | 821 | 9 | 823 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.5503 | 98.9154 | 92.4066 | 58.6255 | 11309 | 124 | 11354 | 933 | 13 | 1.3934 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2923 | 98.9154 | 99.6721 | 75.2903 | 912 | 10 | 912 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1797 | 98.9154 | 97.4549 | 72.8477 | 912 | 10 | 919 | 24 | 3 | 12.5000 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | homalt | 99.1460 | 98.9147 | 99.3785 | 68.5946 | 9114 | 100 | 9114 | 57 | 40 | 70.1754 | |
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | * | 99.1084 | 98.9142 | 99.3035 | 75.2093 | 6559 | 72 | 6558 | 46 | 13 | 28.2609 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3362 | 98.9137 | 99.7624 | 51.3621 | 11746 | 129 | 11756 | 28 | 14 | 50.0000 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7667 | 98.9130 | 98.6207 | 68.3258 | 2002 | 22 | 2002 | 28 | 5 | 17.8571 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.1132 | 98.9130 | 97.3262 | 94.4329 | 182 | 2 | 182 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4962 | 98.9130 | 94.1946 | 61.4016 | 1729 | 19 | 1655 | 102 | 27 | 26.4706 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6977 | 98.9130 | 94.5794 | 80.5719 | 2002 | 22 | 2024 | 116 | 6 | 5.1724 | |
| jmaeng-gatk | SNP | ti | HG002compoundhet | * | 99.3792 | 98.9129 | 99.8498 | 36.3432 | 17288 | 190 | 17288 | 26 | 22 | 84.6154 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1786 | 98.9124 | 99.4462 | 49.9692 | 1637 | 18 | 1616 | 9 | 2 | 22.2222 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | homalt | 99.3639 | 98.9124 | 99.8196 | 67.9886 | 6639 | 73 | 6639 | 12 | 8 | 66.6667 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8791 | 98.9123 | 96.8672 | 42.4242 | 4638 | 51 | 4638 | 150 | 2 | 1.3333 | |
| jlack-gatk | INDEL | D1_5 | segdup | * | 95.5828 | 98.9121 | 92.4704 | 95.7903 | 1091 | 12 | 1093 | 89 | 5 | 5.6180 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | het | 99.2507 | 98.9117 | 99.5921 | 70.2654 | 28083 | 309 | 28077 | 115 | 29 | 25.2174 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1862 | 98.9111 | 99.4628 | 53.1375 | 9992 | 110 | 9998 | 54 | 37 | 68.5185 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | het | 99.2124 | 98.9106 | 99.5159 | 69.6159 | 20974 | 231 | 20970 | 102 | 27 | 26.4706 | |