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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16051-16100 / 86044 show all
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9716
99.0079
96.9569
71.5543
5788585735180166
92.2222
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9716
99.0079
96.9569
71.5543
5788585735180166
92.2222
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.2450
99.0076
99.4836
62.5686
4789484816253
12.0000
jpowers-varprowlSNP*map_l100_m1_e0homalt
99.3441
99.0075
99.6831
63.9191
26735268267358565
76.4706
ghariani-varprowlINDELD1_5map_l100_m1_e0het
91.4439
99.0074
84.9539
88.4423
119712119721263
29.7170
jlack-gatkINDELD1_5map_l100_m1_e0het
93.4933
99.0074
88.5609
87.9481
119712120015510
6.4516
rpoplin-dv42SNPtvmap_l125_m1_e0*
99.1341
99.0072
99.2613
68.8884
158571591585511869
58.4746
ghariani-varprowlSNP*map_l100_m2_e1homalt
99.3161
99.0071
99.6271
64.4501
275202762752010368
66.0194
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.3323
99.0070
93.7984
50.0158
737874739648975
15.3374
bgallagher-sentieonSNP*map_l250_m2_e1homalt
99.3355
99.0066
99.6667
86.2231
269127269197
77.7778
jli-customSNP*map_l250_m2_e1homalt
99.3906
99.0066
99.7775
85.5799
269127269166
100.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.0823
99.0065
97.1751
54.0902
667767670819542
21.5385
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.9880
99.0063
98.9698
87.7821
26902726902812
42.8571
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.0988
99.0063
99.1915
87.6655
26902726992215
68.1818
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.3872
99.0063
99.7710
48.5556
11757118117622717
62.9630
gduggal-bwavardSNP*func_cdshet
99.2091
99.0055
99.4135
34.5015
11050111110186523
35.3846
ghariani-varprowlSNPtimap_l100_m2_e0*
98.5956
99.0053
98.1892
70.8668
4847448748476894185
20.6935
jmaeng-gatkINDELI1_5map_l150_m2_e0homalt
98.7593
99.0050
98.5149
88.5292
199219932
66.6667
ltrigg-rtg2INDELI1_5map_l150_m2_e0homalt
99.2481
99.0050
99.4924
85.2434
199219610
0.0000
jlack-gatkINDELI1_5map_l150_m2_e0homalt
98.5149
99.0050
98.0296
88.4725
199219942
50.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2009
99.0050
99.3976
60.0802
9951099065
83.3333
egarrison-hhgaINDELI1_5map_l150_m2_e0homalt
98.5149
99.0050
98.0296
89.2819
199219941
25.0000
raldana-dualsentieonSNPtimap_l250_m1_e0homalt
99.4375
99.0044
99.8745
84.1493
159116159121
50.0000
hfeng-pmm1SNP*map_l125_m0_e0*
99.1962
99.0044
99.3888
74.3664
191921931918911833
27.9661
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.2867
99.0043
99.5708
47.6796
696769632
66.6667
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1076
99.0041
91.5063
65.9399
2187222187203195
96.0591
mlin-fermikitSNP**homalt
98.9666
99.0041
98.9290
17.0911
11684091175311684251264912153
96.0787
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.7876
99.0041
85.5516
65.0041
2187222179368361
98.0978
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2085
99.0041
99.4137
68.4982
13620137135658052
65.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2085
99.0041
99.4137
68.4982
13620137135658052
65.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8328
99.0038
96.6891
76.0765
38763938841332
1.5038
ghariani-varprowlSNP*lowcmp_SimpleRepeat_triTR_11to50het
97.4281
99.0035
95.9022
49.9948
45704645871961
0.5102
gduggal-bwafbSNP*map_l100_m1_e0het
98.6881
99.0035
98.3746
69.4458
4490745244909742142
19.1375
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.3909
99.0035
99.7815
31.9351
4570464566102
20.0000
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.6661
99.0033
92.5466
51.1010
59665964847
97.9167
gduggal-bwavardSNPtv**
99.2324
99.0032
99.4627
26.1679
960032966695530951611540
29.8392
hfeng-pmm1SNPtvmap_l125_m1_e0het
99.2869
99.0026
99.5728
70.2971
10025101100234311
25.5814
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2382
99.0025
99.4751
81.5138
397437921
50.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2375
99.0025
99.4737
82.2678
397437821
50.0000
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.8483
99.0025
98.6945
81.4707
397437854
80.0000
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.4136
99.0024
92.0759
67.6063
55076555552874758565
11.8747
ckim-gatkINDEL*map_sirenhet
97.5443
99.0018
96.1290
86.6172
446345447018015
8.3333
hfeng-pmm2INDELI1_5map_siren*
99.2171
99.0017
99.4335
80.3741
2975302984174
23.5294
gduggal-bwafbSNP*map_l100_m0_e0homalt
99.4296
99.0017
99.8611
65.4925
11504116115041610
62.5000
ckim-gatkSNP*HG002compoundhet*
99.3973
99.0009
99.7970
41.7198
25564258255615238
73.0769
ghariani-varprowlSNP*map_l100_m2_e0homalt
99.3166
99.0008
99.6343
64.4739
272482752724810067
67.0000
ltrigg-rtg2SNPtiHG002compoundhethet
99.3400
99.0005
99.6817
37.0509
9410959396308
26.6667
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1305
99.0001
99.2612
79.9407
10693108107488026
32.5000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.2630
99.0000
97.5369
60.9615
198219855
100.0000
bgallagher-sentieonSNPtimap_l250_m2_e1het
98.2995
98.9997
97.6091
90.8150
32663332668016
20.0000