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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16001-16050 / 86044 show all
ckim-gatkINDEL*map_l100_m0_e0homalt
98.7267
99.0177
98.4375
85.4504
504550485
62.5000
ckim-vqsrINDEL*map_l100_m0_e0homalt
98.8235
99.0177
98.6301
85.4747
504550474
57.1429
hfeng-pmm1INDEL*map_l100_m0_e0homalt
98.5337
99.0177
98.0545
82.5704
5045504104
40.0000
rpoplin-dv42SNPtvmap_l125_m2_e0*
99.1468
99.0175
99.2763
70.8786
163271621632511970
58.8235
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3348
99.0173
99.6544
63.3928
27406272273979513
13.6842
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
80.5645
99.0173
67.9091
64.2303
2519252569121425
2.0593
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4277
99.0173
99.8415
46.1817
251925251940
0.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3908
99.0173
99.7672
36.4175
171317171444
100.0000
gduggal-bwafbSNP*map_l100_m2_e0het
98.6971
99.0172
98.3791
71.2956
4594345645945757143
18.8904
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.4586
99.0170
97.9065
84.2545
26192626195614
25.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2066
99.0169
99.3969
52.5864
1813181813112
18.1818
bgallagher-sentieonSNPtimap_l250_m2_e0het
98.3066
99.0166
97.6068
90.7462
32223232227916
20.2532
hfeng-pmm3INDEL***
99.3628
99.0161
99.7120
56.9384
3411523390341013985798
81.0152
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.5525
99.0160
98.0933
59.8338
24152424184712
25.5319
ckim-gatkSNPtiHG002compoundhet*
99.4312
99.0159
99.8500
36.2044
17306172173062621
80.7692
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.1899
99.0155
99.3649
88.4872
140814140898
88.8889
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.0852
99.0155
99.1549
88.3559
1408141408126
50.0000
hfeng-pmm2INDEL***
99.3119
99.0152
99.6103
57.8578
341149339334101513341012
75.8621
bgallagher-sentieonSNPtvmap_l150_m0_e0het
97.9977
99.0151
97.0010
83.2079
2815282814877
8.0460
ndellapenna-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3149
99.0149
99.6167
57.6636
5508354855098212134
63.2075
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
96.7542
99.0148
94.5946
84.0288
60365253027
90.0000
jlack-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0453
99.0148
99.0758
65.2537
3216323216307
23.3333
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9059
99.0142
98.7978
89.1921
9049904116
54.5455
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.0685
99.0142
99.1228
89.4371
904990487
87.5000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.5045
99.0138
100.0000
86.4030
502550200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2868
502550211
100.0000
gduggal-snapvardSNP*func_cds*
99.3360
99.0138
99.6603
29.3432
17971179178956123
37.7049
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4311
502550210
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4347
502550211
100.0000
egarrison-hhgaSNPtvmap_l125_m1_e0*
99.3983
99.0135
99.7861
68.1855
15858158158583417
50.0000
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4718
99.0131
99.9347
60.3688
55082549550723619
52.7778
jmaeng-gatkSNPtiHG002compoundhethomalt
99.4701
99.0127
99.9317
30.6381
732173732155
100.0000
ghariani-varprowlSNPtimap_l100_m2_e1*
98.6004
99.0118
98.1924
70.8832
4899648948998902186
20.6208
gduggal-bwavardINDELD1_5*het
93.4417
99.0111
88.4655
62.3753
8670886685823111909864
88.1501
bgallagher-sentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3053
99.0106
99.6019
68.7862
150115150161
16.6667
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.3699
99.0104
93.8665
85.7412
180118156110270
68.6275
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.3699
99.0104
93.8665
85.7412
180118156110270
68.6275
astatham-gatkSNPtvmap_l125_m1_e0homalt
99.4259
99.0102
99.8451
64.3015
580258580296
66.6667
bgallagher-sentieonINDELD1_5map_l150_m0_e0het
97.0991
99.0099
95.2607
91.9833
2002201100
0.0000
gduggal-bwafbINDELI1_5map_sirenhomalt
98.9302
99.0099
98.8506
78.8211
1200121204148
57.1429
gduggal-bwavardINDELD1_5map_l150_m0_e0het
85.0446
99.0099
74.5318
93.3133
2002199686
8.8235
hfeng-pmm3INDELD1_5map_l150_m0_e0het
98.0464
99.0099
97.1014
89.8080
200220160
0.0000
hfeng-pmm2INDELD1_5map_l150_m0_e0het
96.6323
99.0099
94.3662
91.7951
2002201120
0.0000
ckim-gatkINDELD1_5map_l150_m0_e0het
91.5697
99.0099
85.1695
94.5522
2002201350
0.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2387
99.0092
99.4691
88.8279
149915149987
87.5000
gduggal-bwafbSNPtimap_l100_m2_e1het
98.8201
99.0084
98.6326
70.6269
306533073065542595
22.3529
gduggal-bwafbSNPtvmap_l150_m2_e1homalt
99.4171
99.0082
99.8293
75.3205
409341409375
71.4286
rpoplin-dv42INDELD6_15*het
97.5270
99.0079
96.0896
61.5469
1147711511451466447
95.9227