PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15951-16000 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1852 | 99.0239 | 99.3471 | 78.2176 | 913 | 9 | 913 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 98.2056 | 99.0237 | 97.4008 | 89.1607 | 710 | 7 | 712 | 19 | 4 | 21.0526 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9354 | 99.0237 | 96.8707 | 88.7477 | 710 | 7 | 712 | 23 | 3 | 13.0435 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.3522 | 99.0237 | 90.1015 | 65.0864 | 710 | 7 | 710 | 78 | 76 | 97.4359 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2793 | 99.0236 | 99.5363 | 51.7187 | 3651 | 36 | 3649 | 17 | 15 | 88.2353 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1859 | 99.0236 | 91.6345 | 64.6332 | 27686 | 273 | 27790 | 2537 | 281 | 11.0761 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | * | 98.9691 | 99.0236 | 98.9147 | 75.5843 | 31541 | 311 | 31535 | 346 | 12 | 3.4682 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3726 | 99.0232 | 99.7245 | 73.4687 | 5069 | 50 | 5067 | 14 | 4 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4214 | 99.0232 | 99.8227 | 73.4004 | 5069 | 50 | 5067 | 9 | 3 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | * | * | 99.2493 | 99.0230 | 99.4767 | 57.6844 | 149192 | 1472 | 149236 | 785 | 730 | 92.9936 | |
| raldana-dualsentieon | INDEL | * | * | het | 99.3035 | 99.0228 | 99.5858 | 57.9096 | 192236 | 1897 | 191867 | 798 | 611 | 76.5664 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.9278 | 99.0227 | 93.0204 | 76.6292 | 5370 | 53 | 5371 | 403 | 345 | 85.6079 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.9278 | 99.0227 | 93.0204 | 76.6292 | 5370 | 53 | 5371 | 403 | 345 | 85.6079 | |
| ckim-gatk | INDEL | * | HG002complexvar | * | 99.3276 | 99.0226 | 99.6345 | 58.1713 | 76186 | 752 | 76048 | 279 | 226 | 81.0036 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3403 | 99.0226 | 99.6599 | 66.2832 | 27254 | 269 | 27254 | 93 | 68 | 73.1183 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| asubramanian-gatk | INDEL | I6_15 | * | homalt | 97.0392 | 99.0223 | 95.1340 | 55.6784 | 6178 | 61 | 6178 | 316 | 307 | 97.1519 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | homalt | 99.3100 | 99.0221 | 99.5996 | 68.7592 | 2734 | 27 | 2736 | 11 | 10 | 90.9091 | |
| ckim-gatk | INDEL | * | segdup | * | 97.7045 | 99.0219 | 96.4218 | 95.7792 | 2531 | 25 | 2533 | 94 | 10 | 10.6383 | |
| hfeng-pmm3 | INDEL | * | segdup | * | 99.3329 | 99.0219 | 99.6459 | 93.8860 | 2531 | 25 | 2533 | 9 | 3 | 33.3333 | |
| jmaeng-gatk | INDEL | * | * | * | 99.1098 | 99.0216 | 99.1981 | 60.9184 | 341171 | 3371 | 341038 | 2757 | 1621 | 58.7958 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.4329 | 99.0211 | 99.8481 | 74.3625 | 1315 | 13 | 1315 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | * | map_siren | homalt | 99.0590 | 99.0207 | 99.0974 | 80.4586 | 2629 | 26 | 2635 | 24 | 14 | 58.3333 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.4343 | 99.0203 | 99.8518 | 71.6158 | 4043 | 40 | 4043 | 6 | 4 | 66.6667 | |
| ckim-dragen | SNP | ti | map_l125_m1_e0 | het | 97.7308 | 99.0200 | 96.4747 | 76.6075 | 18087 | 179 | 18089 | 661 | 63 | 9.5310 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.3836 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 61.7100 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.1379 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7775 | 99.0196 | 98.5366 | 88.5921 | 202 | 2 | 202 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2605 | 99.0196 | 99.5025 | 85.2747 | 202 | 2 | 200 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4666 | 99.0196 | 94.0419 | 60.5213 | 1212 | 12 | 1168 | 74 | 18 | 24.3243 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 63.7631 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 64.6048 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 63.8889 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.3836 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 89.4467 | 202 | 2 | 202 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 62.1324 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 88.5237 | 202 | 2 | 202 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.9370 | 99.0180 | 98.8562 | 82.4087 | 605 | 6 | 605 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4129 | 99.0178 | 99.8112 | 75.1670 | 2117 | 21 | 2115 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | * | 99.0651 | 99.0177 | 99.1125 | 80.0536 | 4133 | 41 | 4132 | 37 | 3 | 8.1081 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 81.9591 | 504 | 5 | 504 | 8 | 4 | 50.0000 | |