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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 314 315 316 317 318 319 320 321 322 ... 1720 1721 » 15851-15900 / 86044 show all
gduggal-snapplat	SNP	tv	func_cds	*	99.2890	99.0391	99.5401	39.3276	4329	42	4329	20	0	0.0000
egarrison-hhga	INDEL	I1_5	map_l100_m0_e0	homalt	98.5646	99.0385	98.0952	80.8743	206	2	206	4	2	50.0000
eyeh-varpipe	INDEL	I1_5	map_l100_m0_e0	homalt	98.4417	99.0385	97.8520	84.2540	206	2	410	9	8	88.8889
jmaeng-gatk	INDEL	I1_5	*	*	99.2409	99.0383	99.4444	59.6817	149215	1449	149263	834	391	46.8825
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.7947	99.0383	98.5524	55.6705	16271	158	31384	461	49	10.6291
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3072	99.0383	99.5775	51.0793	16271	158	35588	151	137	90.7285
dgrover-gatk	SNP	tv	map_l100_m0_e0	homalt	99.4517	99.0380	99.8689	62.1627	3809	37	3809	5	3	60.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3239	99.0379	99.6116	52.2441	27690	269	27695	108	53	49.0741
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e0	*	98.9520	99.0376	98.8666	84.6288	1132	11	1134	13	3	23.0769
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4508	99.0372	99.8678	44.3327	2263	22	2266	3	0	0.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3353	99.0372	99.6352	71.5761	32916	320	32773	120	43	35.8333
jli-custom	INDEL	I1_5	map_l125_m1_e0	*	99.2158	99.0361	99.3961	84.2466	822	8	823	5	2	40.0000
astatham-gatk	SNP	tv	map_l125_m2_e0	homalt	99.4410	99.0361	99.8492	66.8223	5959	58	5959	9	6	66.6667
ckim-dragen	SNP	ti	map_l125_m2_e1	het	97.7431	99.0360	96.4836	78.3312	18903	184	18905	689	65	9.4340
ckim-gatk	INDEL	D1_5	map_l125_m1_e0	het	94.7425	99.0358	90.8060	91.1611	719	7	721	73	4	5.4795
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	het	97.8277	99.0358	96.6488	86.8244	719	7	721	25	2	8.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m1_e0	het	98.6982	99.0358	98.3629	83.8617	719	7	721	12	2	16.6667
jlack-gatk	INDEL	D1_5	map_l125_m1_e0	het	91.7875	99.0358	85.5279	90.3635	719	7	721	122	5	4.0984
egarrison-hhga	SNP	tv	map_l125_m2_e0	*	99.4065	99.0357	99.7800	70.1050	16330	159	16330	36	17	47.2222
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.2500	99.0354	93.6170	69.7610	308	3	308	21	20	95.2381
ckim-gatk	SNP	*	HG002compoundhet	homalt	99.4644	99.0354	99.8971	35.0629	10678	104	10677	11	10	90.9091
ltrigg-rtg2	INDEL	I1_5	map_l100_m1_e0	homalt	99.3216	99.0347	99.6101	75.9719	513	5	511	2	1	50.0000
ndellapenna-hhga	INDEL	I1_5	map_l100_m1_e0	homalt	99.1304	99.0347	99.2263	80.8802	513	5	513	4	2	50.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4334	99.0346	99.8354	46.3028	6668	65	6670	11	7	63.6364
dgrover-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2427	99.0344	99.4519	67.0189	4718	46	4718	26	9	34.6154
gduggal-bwavard	SNP	ti	*	*	99.3434	99.0343	99.6545	21.4644	2065379	20139	2057255	7133	2188	30.6743
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4917	99.0340	99.9536	62.8172	2153	21	2153	1	0	0.0000
hfeng-pmm2	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	39.5280	205	2	205	0	0
hfeng-pmm3	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	37.3089	205	2	205	0	0
hfeng-pmm1	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	38.6228	205	2	205	0	0
dgrover-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.9375	205	2	205	0	0
astatham-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
bgallagher-sentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
jli-custom	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	36.3354	205	2	205	0	0
raldana-dualsentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	34.5048	205	2	205	0	0
hfeng-pmm1	SNP	tv	map_l125_m2_e1	het	99.3110	99.0335	99.5902	71.6922	10451	102	10449	43	11	25.5814
gduggal-bwafb	SNP	tv	map_l100_m1_e0	het	98.4524	99.0335	97.8781	70.7160	15268	149	15268	331	48	14.5015
egarrison-hhga	SNP	tv	map_l125_m2_e1	*	99.4064	99.0334	99.7822	70.1626	16496	161	16496	36	17	47.2222
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.8292	99.0334	94.7210	60.8998	11373	111	11986	668	500	74.8503
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3619	99.0333	99.6927	53.9179	3893	38	3893	12	0	0.0000
gduggal-snapfb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	88.4732	99.0329	79.9484	69.7226	55093	538	55477	13914	538	3.8666
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.5970	99.0328	96.2023	69.6244	4403	43	4357	172	164	95.3488
hfeng-pmm1	SNP	tv	map_l125_m2_e0	het	99.3085	99.0328	99.5858	71.6339	10341	101	10339	43	11	25.5814
gduggal-bwavard	SNP	tv	*	homalt	99.4965	99.0327	99.9647	19.0358	373475	3648	371220	131	86	65.6489
dgrover-gatk	SNP	tv	map_l150_m2_e1	homalt	99.4413	99.0324	99.8537	71.5870	4094	40	4094	6	4	66.6667
jlack-gatk	SNP	*	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
jlack-gatk	SNP	tv	HG002complexvar	hetalt	99.0323	99.0323	99.0323	39.5712	307	3	307	3	3	100.0000
raldana-dualsentieon	SNP	*	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
ndellapenna-hhga	INDEL	D1_5	map_l100_m2_e1	homalt	98.9525	99.0323	98.8728	82.5169	614	6	614	7	6	85.7143

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