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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 312 313 314 315 316 317 318 319 320 ... 1720 1721 » 15751-15800 / 86044 show all
rpoplin-dv42	SNP	ti	map_l150_m1_e0	homalt	99.3702	99.0583	99.6841	71.0853	7258	69	7258	23	22	95.6522
ghariani-varprowl	SNP	ti	map_l100_m1_e0	het	98.1681	99.0582	97.2939	72.4309	29660	282	29662	825	157	19.0303
ckim-dragen	SNP	tv	map_l125_m2_e1	*	98.4134	99.0575	97.7776	75.6170	16500	157	16499	375	39	10.4000
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3981	99.0572	99.7414	71.0854	30471	290	30469	79	73	92.4051
jli-custom	SNP	tv	map_l125_m1_e0	*	99.2462	99.0572	99.4359	66.9313	15865	151	15864	90	26	28.8889
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.3847	99.0570	76.5871	59.4598	2416	23	2437	745	18	2.4161
jlack-gatk	SNP	ti	map_l125_m2_e0	het	95.3314	99.0570	91.8760	83.3511	18698	178	18694	1653	140	8.4695
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2575	99.0562	99.4596	77.8403	4198	40	4233	23	9	39.1304
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
rpoplin-dv42	SNP	*	map_l125_m1_e0	*	99.2363	99.0558	99.4176	68.8661	44899	428	44893	263	168	63.8783
astatham-gatk	INDEL	I1_5	segdup	*	99.1033	99.0557	99.1509	94.5434	1049	10	1051	9	2	22.2222
hfeng-pmm1	INDEL	I1_5	segdup	*	99.1501	99.0557	99.2446	94.2109	1049	10	1051	8	2	25.0000
hfeng-pmm2	INDEL	I1_5	segdup	*	99.1501	99.0557	99.2446	94.4523	1049	10	1051	8	2	25.0000
gduggal-bwafb	SNP	tv	map_l100_m2_e0	het	98.4689	99.0556	97.8891	72.5475	15628	149	15628	337	48	14.2433
jmaeng-gatk	SNP	tv	HG002compoundhet	homalt	99.4223	99.0555	99.7918	42.9493	3356	32	3355	7	6	85.7143
ckim-gatk	SNP	tv	HG002compoundhet	homalt	99.4517	99.0555	99.8512	42.9154	3356	32	3355	5	4	80.0000
bgallagher-sentieon	INDEL	*	map_siren	*	98.9031	99.0553	98.7513	82.8003	7340	70	7355	93	21	22.5806
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8431	99.0551	98.6319	76.1009	19394	185	19394	269	19	7.0632
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8431	99.0551	98.6319	76.1009	19394	185	19394	269	19	7.0632
gduggal-bwavard	SNP	ti	*	het	99.2556	99.0550	99.4571	24.6552	1269783	12114	1265789	6910	2002	28.9725
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2612	99.0548	99.4685	84.3994	2620	25	2620	14	6	42.8571
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.4796	99.0547	94.0350	54.6713	9431	90	10042	637	488	76.6091
hfeng-pmm1	INDEL	D16_PLUS	*	homalt	99.2597	99.0544	99.4659	65.7799	1676	16	1676	9	4	44.4444
ckim-dragen	SNP	tv	map_l125_m2_e0	*	98.4063	99.0539	97.7671	75.5410	16333	156	16332	373	39	10.4558
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3054	99.0537	99.5584	45.3803	2931	28	2931	13	0	0.0000
ciseli-custom	SNP	ti	HG002complexvar	homalt	96.5088	99.0536	94.0915	19.4065	191633	1831	189105	11875	5178	43.6042
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	het	99.0158	99.0536	98.9780	81.3490	1256	12	1259	13	2	15.3846
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.0400	99.0531	93.2047	66.1798	3243	31	3237	236	234	99.1525
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.5113	99.0527	99.9742	29.4879	3869	37	3868	1	1	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4211	99.0527	99.7923	61.9326	4810	46	4804	10	2	20.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5238	99.0521	100.0000	59.3712	1672	16	1680	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	95.8716	99.0521	92.8889	67.6259	209	2	209	16	15	93.7500
hfeng-pmm1	SNP	ti	map_l125_m0_e0	*	99.2424	99.0519	99.4336	73.9101	12641	121	12639	72	20	27.7778
jlack-gatk	SNP	tv	map_l125_m1_e0	het	92.8605	99.0519	87.3976	83.4310	10030	96	10028	1446	80	5.5325
ckim-vqsr	INDEL	I1_5	*	*	99.3579	99.0515	99.6662	59.3791	149235	1429	149282	500	397	79.4000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3600	99.0514	99.6705	83.4424	1253	12	1210	4	0	0.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1690	99.0514	99.2868	87.9764	1253	12	1253	9	4	44.4444
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3262	99.0514	99.6025	88.3465	1253	12	1253	5	5	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.8781	99.0512	92.9019	82.4220	522	5	445	34	34	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5233	99.0511	100.0000	35.2554	6681	64	6681	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3201	99.0507	99.5909	51.8830	3652	35	3652	15	12	80.0000
ckim-gatk	SNP	*	segdup	homalt	99.4811	99.0505	99.9155	88.5459	10641	102	10641	9	9	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5047	99.0504	99.9631	30.7908	2712	26	2712	1	1	100.0000
jmaeng-gatk	INDEL	D16_PLUS	*	het	97.5431	99.0503	96.0810	78.7734	3129	30	2893	118	85	72.0339
hfeng-pmm2	SNP	tv	map_l125_m0_e0	*	98.7817	99.0499	98.5149	77.4668	6568	63	6567	99	13	13.1313
hfeng-pmm2	SNP	tv	map_l150_m1_e0	het	98.7581	99.0498	98.4681	78.5736	6880	66	6878	107	10	9.3458
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e1	*	98.9647	99.0493	98.8803	84.7056	1146	11	1148	13	3	23.0769
jli-custom	SNP	tv	map_l250_m2_e1	homalt	99.3111	99.0486	99.5749	85.5298	937	9	937	4	4	100.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	homalt	99.2585	99.0486	99.4692	86.2982	937	9	937	5	4	80.0000

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