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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15701-15750 / 86044 show all
jli-customSNPtvmap_l250_m1_e0homalt
99.2974
99.0654
99.5305
84.1518
848884844
100.0000
ltrigg-rtg2INDEL*func_cdshet
99.0654
99.0654
99.0654
38.1503
212221220
0.0000
bgallagher-sentieonSNPtvmap_l250_m1_e0homalt
99.2393
99.0654
99.4138
85.1935
848884854
80.0000
gduggal-bwafbSNPtvmap_l100_m2_e1het
98.4812
99.0651
97.9041
72.6029
157891491578933849
14.4970
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5260
99.0651
99.9913
63.9562
114441081144411
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5260
99.0651
99.9913
63.9562
114441081144411
100.0000
jli-customINDELD1_5map_siren*
99.1919
99.0649
99.3191
79.7902
3496333501248
33.3333
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
89.9267
99.0645
82.3323
76.8153
2118202111453345
76.1589
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3198
99.0645
99.5765
41.0214
211820211692
22.2222
gduggal-snapplatSNPti*homalt
99.4971
99.0644
99.9337
17.3977
7955267513795327528217
41.0985
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
71.0348
99.0643
55.3687
72.8200
84788566905
0.7246
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0878
99.0624
99.1133
72.7315
308512923085127626
9.4203
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0878
99.0624
99.1133
72.7315
308512923085127626
9.4203
astatham-gatkSNP*map_l125_m2_e0homalt
99.4712
99.0619
99.8839
66.1554
17212163172122016
80.0000
raldana-dualsentieonSNPtvmap_l125_m1_e0het
98.8615
99.0618
98.6621
72.9114
1003195100291361
0.7353
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.4116
99.0616
99.7639
37.2813
4645444649115
45.4545
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
88.7788
99.0616
80.4299
50.4389
4645444677113826
2.2847
hfeng-pmm1SNPtimap_l100_m1_e0het
99.3951
99.0615
99.7309
63.4093
29661281296548020
25.0000
rpoplin-dv42SNPtvmap_l125_m1_e0homalt
99.4262
99.0614
99.7937
67.2577
58055558051212
100.0000
ckim-vqsrINDEL***
99.2541
99.0614
99.4476
60.7768
341308323434116718951532
80.8443
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.9717
99.0613
98.8823
57.7880
60155761937023
32.8571
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0857
99.0613
99.1102
68.1518
2005192005184
22.2222
ckim-vqsrSNP**het
99.4736
99.0611
99.8894
26.9578
18559961759118558762054101
4.9172
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5283
99.0610
100.0000
84.2066
844884400
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.4218
99.0610
97.7907
85.5292
84488411914
73.6842
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.3685
99.0609
93.8186
66.4004
305929256516932
18.9349
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2934
99.0605
99.5275
75.3924
168716168583
37.5000
hfeng-pmm2INDELD1_5map_l100_m2_e0*
98.7266
99.0601
98.3954
83.7702
1897181901314
12.9032
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9423
99.0599
98.8249
87.6792
8438841108
80.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.1765
99.0599
99.2933
88.5872
843884364
66.6667
gduggal-bwavardSNP**homalt
99.5128
99.0597
99.9700
16.7717
1169065110971159771348269
77.2989
gduggal-snapfbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.3021
99.0596
93.6939
64.5457
100079510029675110
16.2963
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4336
99.0594
99.8106
68.9594
263325263553
60.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.1168
99.0593
99.1743
78.7979
105310108194
44.4444
gduggal-bwafbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2991
99.0593
97.5505
61.1472
2769626327758697164
23.5294
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5274
99.0593
100.0000
79.9199
105310105300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.4371
99.0591
97.8229
71.0281
4527243045697101732
3.1465
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4371
99.0591
97.8229
71.0281
4527243045697101732
3.1465
jpowers-varprowlSNPtvfunc_cdshet
98.3558
99.0591
97.6623
39.9644
2632252632630
0.0000
jpowers-varprowlSNPtimap_l100_m1_e0homalt
99.4411
99.0590
99.8261
62.5525
17791169177913126
83.8710
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4680
99.0588
99.8807
41.3986
842883710
0.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4763
99.0588
99.8974
52.8829
389437389440
0.0000
mlin-fermikitSNPti*homalt
99.0118
99.0588
98.9648
15.5441
795481755879550283218052
96.7672
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
74.1073
99.0588
59.1965
64.7074
3894373949272232
1.1756
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.3059
99.0585
99.5546
59.8847
19675187196688846
52.2727
ltrigg-rtg2INDELI1_5map_l100_m2_e0homalt
99.3383
99.0584
99.6198
77.9732
526552421
50.0000
ndellapenna-hhgaINDELI1_5map_l100_m2_e0homalt
99.1517
99.0584
99.2453
82.4212
526552642
50.0000
rpoplin-dv42INDEL*map_sirenhomalt
99.1894
99.0584
99.3208
79.6138
26302526321811
61.1111