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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 310 311 312 313 314 315 316 317 318 ... 1720 1721 » 15651-15700 / 86044 show all
ckim-gatk	SNP	tv	*	homalt	99.5305	99.0738	99.9914	20.3623	373630	3493	373616	32	19	59.3750
gduggal-snapplat	SNP	tv	segdup	homalt	99.3958	99.0735	99.7201	90.1395	3208	30	3207	9	7	77.7778
rpoplin-dv42	SNP	*	map_l125_m2_e0	*	99.2517	99.0733	99.4307	70.7955	46290	433	46284	265	170	64.1509
gduggal-bwafb	SNP	ti	HG002compoundhet	*	98.0359	99.0731	97.0203	40.7433	17316	162	17387	534	136	25.4682
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3610	99.0730	99.6508	61.9238	855	8	856	3	2	66.6667
hfeng-pmm3	INDEL	D1_5	map_l100_m0_e0	*	98.9018	99.0730	98.7313	82.4245	855	8	856	11	2	18.1818
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	97.1636	99.0725	95.3268	47.5871	3418	32	3427	168	33	19.6429
gduggal-bwavard	SNP	ti	*	homalt	99.5201	99.0724	99.9718	15.7269	795590	7449	791466	223	186	83.4081
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1976	99.0717	99.3238	51.2490	6617	62	6610	45	42	93.3333
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	*	98.7423	99.0717	98.4151	83.8640	1921	18	1925	31	4	12.9032
gduggal-bwavard	SNP	ti	func_cds	*	99.3703	99.0716	99.6707	28.1478	13659	128	13622	45	15	33.3333
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.2941	99.0714	99.5178	62.5456	9602	90	9699	47	29	61.7021
gduggal-bwavard	SNP	ti	func_cds	het	99.2690	99.0710	99.4677	32.1944	8425	79	8409	45	15	33.3333
jmaeng-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.3384	99.0709	97.6165	72.3626	5545	52	5529	135	121	89.6296
ckim-dragen	SNP	*	map_l150_m0_e0	homalt	99.3015	99.0707	99.5334	70.2317	4051	38	4053	19	16	84.2105
jmaeng-gatk	INDEL	I1_5	segdup	het	93.2743	99.0706	88.1188	96.5876	533	5	534	72	0	0.0000
hfeng-pmm2	INDEL	I1_5	segdup	het	98.9797	99.0706	98.8889	95.3384	533	5	534	6	0	0.0000
hfeng-pmm1	INDEL	I1_5	segdup	het	98.9797	99.0706	98.8889	94.9664	533	5	534	6	0	0.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4647	99.0705	99.8621	50.6131	3624	34	3620	5	1	20.0000
eyeh-varpipe	SNP	*	map_l250_m0_e0	het	97.4164	99.0704	95.8167	94.5377	1492	14	1443	63	2	3.1746
astatham-gatk	SNP	*	map_l125_m2_e1	homalt	99.4760	99.0703	99.8850	66.1765	17369	163	17369	20	16	80.0000
ghariani-varprowl	SNP	ti	map_l100_m2_e1	homalt	99.4248	99.0700	99.7822	63.1662	18322	172	18322	40	28	70.0000
rpoplin-dv42	SNP	tv	map_l125_m2_e0	homalt	99.4329	99.0693	99.7991	69.7738	5961	56	5961	12	12	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.9955	99.0692	98.9219	52.5490	2661	25	2661	29	0	0.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2355	99.0692	99.4023	51.3626	2661	25	2661	16	1	6.2500
gduggal-snapplat	SNP	*	segdup	homalt	99.4486	99.0692	99.8310	88.7280	10643	100	10636	18	13	72.2222
egarrison-hhga	SNP	*	map_l125_m1_e0	*	99.4419	99.0690	99.8177	68.7095	44905	422	44905	82	41	50.0000
ckim-gatk	SNP	tv	HG002complexvar	*	99.5164	99.0689	99.9680	22.5419	243860	2292	243768	78	28	35.8974
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2560	99.0686	99.4441	78.7870	6595	62	6619	37	15	40.5405
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2828	99.0685	99.4980	45.3418	4573	43	4559	23	2	8.6957
bgallagher-sentieon	INDEL	*	map_siren	het	98.7628	99.0683	98.4592	83.3559	4466	42	4473	70	8	11.4286
hfeng-pmm3	SNP	*	map_l125_m0_e0	het	99.1347	99.0682	99.2012	76.1218	12546	118	12543	101	9	8.9109
raldana-dualsentieon	SNP	*	map_l100_m0_e0	*	99.0621	99.0682	99.0561	67.1734	32535	306	32531	310	12	3.8710
astatham-gatk	SNP	ti	map_l125_m1_e0	homalt	99.4818	99.0675	99.8996	63.1497	10942	103	10942	11	10	90.9091
jlack-gatk	SNP	ti	map_l125_m2_e1	het	95.3643	99.0674	91.9280	83.3869	18909	178	18905	1660	140	8.4337
gduggal-snapplat	SNP	ti	segdup	homalt	99.4715	99.0673	99.8790	87.9842	7435	70	7429	9	6	66.6667
ghariani-varprowl	SNP	ti	map_l100_m2_e0	het	98.1558	99.0660	97.2621	74.0240	30336	286	30338	854	157	18.3841
ghariani-varprowl	SNP	ti	map_l100_m2_e0	homalt	99.4217	99.0660	99.7800	63.1898	18138	171	18138	40	28	70.0000
hfeng-pmm1	SNP	ti	map_l100_m2_e0	het	99.3987	99.0660	99.7336	64.8032	30336	286	30329	81	20	24.6914
dgrover-gatk	INDEL	I6_15	HG002complexvar	het	99.4230	99.0658	99.7827	59.6952	2333	22	2296	5	4	80.0000
cchapple-custom	INDEL	D1_5	HG002complexvar	het	99.3604	99.0657	99.6568	53.2015	20571	194	21196	73	60	82.1918
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.2770	99.0654	93.6413	86.2049	1802	17	1561	106	70	66.0377
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.2770	99.0654	93.6413	86.2049	1802	17	1561	106	70	66.0377
egarrison-hhga	SNP	tv	map_l250_m1_e0	homalt	99.4138	99.0654	99.7647	86.4065	848	8	848	2	2	100.0000
hfeng-pmm2	INDEL	*	func_cds	het	99.0697	99.0654	99.0741	49.1765	212	2	214	2	0	0.0000
hfeng-pmm3	INDEL	*	func_cds	het	99.5305	99.0654	100.0000	46.0957	212	2	214	0	0
jlack-gatk	SNP	*	map_l125_m2_e0	het	94.4864	99.0654	90.3119	83.7916	29044	274	29038	3115	221	7.0947
jli-custom	INDEL	*	func_cds	het	99.2974	99.0654	99.5305	45.8015	212	2	212	1	0	0.0000
hfeng-pmm1	INDEL	*	func_cds	het	99.0697	99.0654	99.0741	46.6667	212	2	214	2	0	0.0000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	81.8789	99.0654	69.7740	90.1347	1484	14	1482	642	38	5.9190

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