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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15551-15600 / 86044 show all
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4235
99.0875
99.7618
50.0170
293227293270
0.0000
raldana-dualsentieonSNPtvmap_l150_m2_e1*
99.0225
99.0871
98.9579
75.9025
11397105113951203
2.5000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.3592
99.0869
99.6329
31.6608
2713252714101
10.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4652
99.0868
99.8466
80.5547
651665110
0.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5413
99.0868
100.0000
78.5149
651665100
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5413
99.0868
100.0000
78.2783
651665100
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.8557
99.0868
90.9713
82.4616
86886656662
93.9394
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.3832
99.0868
99.6813
36.6712
1063498106353419
55.8824
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9234
99.0868
91.0959
82.4814
86886656561
93.8462
ckim-dragenSNP*map_l125_m1_e0*
98.3997
99.0866
97.7222
72.8507
44913414449191047117
11.1748
jlack-gatkINDEL*HG002complexvar*
99.2231
99.0863
99.3603
58.0205
7623570376113490357
72.8571
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2254
99.0858
99.3653
88.4800
140913140998
88.8889
raldana-dualsentieonSNPtimap_l250_m2_e0homalt
99.4834
99.0852
99.8847
85.3537
173316173321
50.0000
ckim-gatkSNPtiHG002compoundhethet
99.4351
99.0847
99.7881
40.5181
94188794182015
75.0000
gduggal-bwafbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.0000
99.0847
98.9155
68.8533
17321617331912
63.1579
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.1277
99.0847
86.0835
48.4103
43344337070
100.0000
ckim-vqsrSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.5116
99.0847
99.9423
61.0562
173216173211
100.0000
jli-customSNP*map_l125_m1_e0*
99.3178
99.0844
99.5522
66.7512
449124154490920267
33.1683
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4485
99.0842
99.8155
76.9264
541554111
100.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5146
99.0842
99.9487
54.1691
389536389520
0.0000
raldana-dualsentieonSNPtvmap_l150_m2_e0*
99.0273
99.0841
98.9706
75.8842
11251104112491173
2.5641
ckim-gatkINDELD1_5map_l125_m2_e0het
94.8739
99.0838
91.0072
91.6037
7577759754
5.3333
hfeng-pmm3INDELD1_5map_l125_m2_e0het
98.7626
99.0838
98.4436
84.5181
7577759122
16.6667
jlack-gatkINDELD1_5map_l125_m2_e0het
92.0548
99.0838
85.9570
90.8790
75777591245
4.0323
hfeng-pmm2INDELD1_5map_l125_m2_e0het
97.9343
99.0838
96.8112
87.3344
7577759252
8.0000
astatham-gatkSNPtimap_l125_m2_e1homalt
99.4917
99.0836
99.9032
65.8143
11353105113531110
90.9091
rpoplin-dv42SNPtimap_l125_m1_e0*
99.2894
99.0830
99.4967
68.8733
2906626929062147101
68.7075
hfeng-pmm3SNPtimap_l250_m1_e0*
99.0936
99.0828
99.1044
88.3618
4537424537415
12.1951
hfeng-pmm2SNPtimap_l250_m1_e0*
98.7163
99.0828
98.3525
89.4985
4537424537769
11.8421
ckim-isaacSNPtifunc_cdshet
99.5275
99.0828
99.9763
20.1440
842678842620
0.0000
ltrigg-rtg1INDEL*map_l125_m2_e0homalt
99.2113
99.0826
99.3404
85.1285
756775353
60.0000
ltrigg-rtg2INDELI1_5map_l125_m1_e0homalt
99.3846
99.0826
99.6885
78.7135
324332010
0.0000
gduggal-snapfbINDELI1_5map_l125_m1_e0homalt
98.6273
99.0826
98.1763
88.7097
324332363
50.0000
bgallagher-sentieonINDELD1_5map_l150_m2_e0*
98.3127
99.0826
97.5547
89.6483
7567758194
21.0526
jlack-gatkINDEL*map_l250_m1_e0homalt
97.7376
99.0826
96.4286
94.6180
108110843
75.0000
hfeng-pmm2INDELD1_5map_l150_m2_e0*
98.0583
99.0826
97.0551
89.2528
7567758233
13.0435
eyeh-varpipeINDELI1_5map_l125_m1_e0homalt
98.7696
99.0826
98.4586
84.5167
324351187
87.5000
gduggal-bwafbINDEL*map_l250_m1_e0homalt
97.7376
99.0826
96.4286
95.4155
108110843
75.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5046
99.0824
99.9304
64.6956
114461061149186
75.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5046
99.0824
99.9304
64.6956
114461061149186
75.0000
ckim-dragenINDELD16_PLUS*het
97.5880
99.0820
96.1385
80.1270
313029288811638
32.7586
hfeng-pmm2INDELI1_5HG002complexvarhet
99.4756
99.0819
99.8724
57.6818
18022167180022311
47.8261
cchapple-customSNP*HG002compoundhethomalt
99.5150
99.0818
99.9520
31.0764
10683991041955
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3055
99.0812
99.5308
74.4619
6383959263852301259
86.0465
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.4728
99.0810
99.8678
43.7004
226421226730
0.0000
rpoplin-dv42SNPtimap_l150_m2_e0homalt
99.3810
99.0809
99.6830
73.3835
75467075462423
95.8333
hfeng-pmm2INDELD1_5map_l125_m1_e0*
98.3151
99.0809
97.5610
86.3283
1078101080274
14.8148
hfeng-pmm3INDELD1_5map_l125_m1_e0*
98.9456
99.0809
98.8106
83.8505
1078101080133
23.0769
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2177
99.0809
99.3548
63.5417
107810107874
57.1429
jpowers-varprowlSNPtimap_l100_m2_e1homalt
99.4410
99.0808
99.8039
64.9625
18324170183243628
77.7778