PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15451-15500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | * | 99.3100 | 99.1069 | 99.5138 | 70.8133 | 30296 | 273 | 30292 | 148 | 102 | 68.9189 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4403 | 99.1066 | 99.7762 | 43.0060 | 6656 | 60 | 8025 | 18 | 13 | 72.2222 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4367 | 99.1065 | 92.0290 | 69.7242 | 2662 | 24 | 2667 | 231 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8419 | 99.1062 | 98.5790 | 59.3072 | 7318 | 66 | 7284 | 105 | 100 | 95.2381 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | * | 97.2195 | 99.1054 | 95.4041 | 44.2893 | 25591 | 231 | 16939 | 816 | 176 | 21.5686 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | * | 99.1029 | 99.1050 | 99.1009 | 66.4175 | 47502 | 429 | 47504 | 431 | 106 | 24.5940 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4000 | 99.1045 | 99.6973 | 59.5840 | 996 | 9 | 988 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e0 | * | 99.3062 | 99.1044 | 99.5088 | 70.7721 | 29987 | 271 | 29983 | 148 | 102 | 68.9189 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.5958 | 99.1036 | 98.0931 | 56.9237 | 10503 | 95 | 10494 | 204 | 148 | 72.5490 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | homalt | 99.0228 | 99.1035 | 98.9422 | 84.0369 | 1216 | 11 | 1216 | 13 | 6 | 46.1538 | |
| jli-custom | SNP | * | map_l125_m2_e0 | * | 99.3286 | 99.1032 | 99.5549 | 68.8474 | 46304 | 419 | 46301 | 207 | 67 | 32.3671 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | homalt | 99.4457 | 99.1031 | 99.7907 | 67.9320 | 7624 | 69 | 7629 | 16 | 15 | 93.7500 | |
| ltrigg-rtg2 | SNP | tv | map_siren | * | 99.4071 | 99.1030 | 99.7130 | 49.8109 | 45518 | 412 | 45517 | 131 | 9 | 6.8702 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.7525 | 99.1025 | 75.5722 | 63.2591 | 3975 | 36 | 4028 | 1302 | 33 | 2.5346 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6119 | 99.1025 | 98.1262 | 58.8223 | 3975 | 36 | 3980 | 76 | 19 | 25.0000 | |
| asubramanian-gatk | INDEL | D1_5 | * | het | 99.3754 | 99.1025 | 99.6499 | 59.9427 | 86788 | 786 | 86804 | 305 | 126 | 41.3115 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.7849 | 99.1019 | 98.4699 | 79.4919 | 10704 | 97 | 10747 | 167 | 2 | 1.1976 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4741 | 99.1018 | 99.8492 | 51.2858 | 1324 | 12 | 1324 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7049 | 99.1018 | 92.5331 | 67.6378 | 1324 | 12 | 1326 | 107 | 8 | 7.4766 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | het | 98.8125 | 99.1018 | 98.5248 | 79.6036 | 7282 | 66 | 7280 | 109 | 10 | 9.1743 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | * | 99.3336 | 99.1016 | 99.5666 | 73.6726 | 30334 | 275 | 30328 | 132 | 37 | 28.0303 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5487 | 99.1014 | 100.0000 | 35.3153 | 3419 | 31 | 3416 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.9805 | 99.1013 | 98.8599 | 68.0375 | 1213 | 11 | 1214 | 14 | 8 | 57.1429 | |
| ltrigg-rtg2 | INDEL | * | func_cds | * | 99.3248 | 99.1011 | 99.5495 | 36.5714 | 441 | 4 | 442 | 2 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | * | 99.3574 | 99.1001 | 99.6162 | 66.6526 | 29071 | 264 | 29069 | 112 | 41 | 36.6071 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | het | 98.8982 | 99.0998 | 98.6974 | 74.5288 | 10458 | 95 | 10456 | 138 | 1 | 0.7246 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | * | 98.4159 | 99.0996 | 97.7415 | 74.8940 | 46777 | 425 | 46783 | 1081 | 120 | 11.1008 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3107 | 99.0992 | 99.5231 | 80.1218 | 6821 | 62 | 6887 | 33 | 15 | 45.4545 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3567 | 99.0991 | 99.6157 | 72.3838 | 1320 | 12 | 1296 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9825 | 99.0991 | 98.8662 | 76.1105 | 440 | 4 | 436 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6466 | 99.0991 | 98.1982 | 76.5823 | 440 | 4 | 436 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 91.2863 | 99.0991 | 84.6154 | 97.2792 | 110 | 1 | 110 | 20 | 1 | 5.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 94.4923 | 110 | 1 | 110 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8242 | 99.0991 | 98.5507 | 72.0171 | 1320 | 12 | 1292 | 19 | 15 | 78.9474 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 96.9163 | 99.0991 | 94.8276 | 94.9301 | 110 | 1 | 110 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9825 | 99.0991 | 98.8662 | 75.3356 | 440 | 4 | 436 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 75.6817 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 76.2758 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2077 | 99.0991 | 99.3166 | 75.7056 | 440 | 4 | 436 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 96.1513 | 110 | 1 | 110 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4674 | 99.0988 | 97.8440 | 74.2336 | 47836 | 435 | 47787 | 1053 | 987 | 93.7322 | |
| jli-custom | SNP | tv | map_l100_m1_e0 | het | 99.2078 | 99.0984 | 99.3174 | 64.0498 | 15278 | 139 | 15277 | 105 | 24 | 22.8571 | |
| gduggal-bwavard | SNP | * | func_cds | homalt | 99.5466 | 99.0973 | 100.0000 | 21.7886 | 6916 | 63 | 6874 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2098 | 99.0971 | 99.3228 | 35.3285 | 439 | 4 | 440 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.0868 | 99.0968 | 99.0767 | 50.8276 | 10313 | 94 | 10302 | 96 | 89 | 92.7083 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | * | 98.8263 | 99.0968 | 98.5573 | 80.5178 | 7790 | 71 | 7788 | 114 | 20 | 17.5439 | |