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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15401-15450 / 86044 show all
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3929
99.1153
99.6722
49.8944
4257384257143
21.4286
gduggal-snapvardSNPtifunc_cds*
99.4321
99.1151
99.7511
27.3375
13665122136283414
41.1765
rpoplin-dv42INDEL*func_cdshomalt
99.3348
99.1150
99.5556
35.7143
224222411
100.0000
eyeh-varpipeINDELD1_5*homalt
95.4519
99.1150
92.0499
59.2107
484934334844441844111
98.2553
asubramanian-gatkINDEL*func_cdshomalt
99.3348
99.1150
99.5556
39.8396
224222411
100.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2704
99.1149
99.4264
74.8452
53754853733127
87.0968
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2704
99.1149
99.4264
74.8452
53754853733127
87.0968
jlack-gatkSNP*map_l100_m1_e0*
97.0238
99.1147
95.0193
74.0812
71762641717513761290
7.7107
qzeng-customSNPtvHG002compoundhethomalt
98.8473
99.1145
98.5816
49.2075
33583027804035
87.5000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4286
99.1139
99.7452
49.4364
156614156640
0.0000
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
95.0613
99.1139
91.3271
69.3870
15661415691490
0.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5550
99.1139
100.0000
47.7303
156614156600
bgallagher-sentieonSNPtvmap_l125_m0_e0het
98.2208
99.1138
97.3437
79.3814
436239436111915
12.6050
gduggal-bwafbSNP*map_l125_m2_e0homalt
99.4945
99.1137
99.8782
70.3251
17221154172212113
61.9048
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.5341
99.1135
96.0043
33.9044
55954445185173
93.5135
hfeng-pmm2INDELD16_PLUS*homalt
99.0257
99.1135
98.9381
67.4789
16771516771812
66.6667
egarrison-hhgaSNPtimap_l125_m2_e1*
99.4698
99.1135
99.8287
70.7805
30298271302985224
46.1538
jlack-gatkINDELD1_5**
99.0320
99.1134
98.9507
60.1218
14544413011455021543552
35.7745
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8835
99.1132
98.6549
87.3860
23472123473217
53.1250
hfeng-pmm3INDEL*segduphet
99.3844
99.1132
99.6571
94.2790
145313145350
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1341
99.1132
99.1550
87.2227
2347212347208
40.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-dragenSNPtimap_l150_m1_e0homalt
99.4455
99.1129
99.7803
65.1947
72626572671615
93.7500
gduggal-bwafbSNP*map_l125_m1_e0homalt
99.4923
99.1127
99.8748
68.0895
16755150167552113
61.9048
gduggal-bwafbSNPtimap_l125_m1_e0homalt
99.4956
99.1127
99.8814
67.6839
109479810947137
53.8462
gduggal-bwafbSNPtvmap_l125_m1_e0homalt
99.4861
99.1126
99.8624
68.8267
580852580886
75.0000
bgallagher-sentieonINDELD1_5map_l100_m2_e0*
98.8043
99.1123
98.4982
84.6307
1898171902296
20.6897
jli-customSNP*map_l125_m2_e1*
99.3354
99.1123
99.5595
68.9095
467834194678020767
32.3671
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5138
99.1122
99.9186
36.8380
245622245521
50.0000
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.9022
99.1118
98.6934
54.7879
280092515113767794
13.8848
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.4642
99.1114
99.8195
47.8833
167315165933
100.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.4473
99.1113
99.7856
56.2027
16283146162903523
65.7143
gduggal-bwafbSNPtvmap_l125_m2_e1homalt
99.4877
99.1110
99.8673
71.0512
602054602086
75.0000
egarrison-hhgaSNPtimap_l125_m2_e0*
99.4693
99.1110
99.8302
70.7438
29989269299895124
47.0588
jlack-gatkSNPtimap_l100_m2_e1*
97.5095
99.1108
95.9591
74.4631
49045440490382065195
9.4431
bgallagher-sentieonSNP*map_l150_m0_e0*
98.7085
99.1107
98.3096
80.7877
119251071192220530
14.6341
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2043
99.1106
99.2981
73.8671
9360984093517661572
86.5356
hfeng-pmm3SNPtvmap_l125_m0_e0*
99.1700
99.1102
99.2298
75.2152
6572596571517
13.7255
gduggal-bwafbSNPtimap_l100_m2_e0*
99.1045
99.1095
99.0994
68.4259
4852543648527441108
24.4898
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
93.5938
99.1094
88.6598
70.4168
77977749915
15.1515
gduggal-bwafbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.5802
99.1091
98.0569
48.2748
180211621806635880
22.3464
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2748
99.1091
99.4411
74.0482
6385757463870359327
91.0864
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.4857
99.1089
99.8653
46.8501
667360667395
55.5556
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5376
99.1089
99.9700
56.4901
200191802001966
100.0000
mlin-fermikitSNPtvfunc_cds*
99.2667
99.1078
99.4262
22.7208
43323943322514
56.0000
jlack-gatkSNPtimap_l100_m2_e0*
97.4962
99.1075
95.9365
74.4561
48524437485172055194
9.4404
cchapple-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4541
99.1074
99.8032
43.2339
11769106116642318
78.2609
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222