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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 302 303 304 305 306 307 308 309 310 ... 1720 1721 » 15251-15300 / 86044 show all
jlack-gatk	SNP	*	map_l100_m2_e1	*	97.0682	99.1343	95.0864	75.5739	74090	647	74079	3828	292	7.6280
hfeng-pmm3	INDEL	*	map_l150_m1_e0	homalt	98.9201	99.1342	98.7069	86.2069	458	4	458	6	3	50.0000
hfeng-pmm2	INDEL	*	map_l150_m1_e0	homalt	99.0270	99.1342	98.9201	87.1816	458	4	458	5	3	60.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4571	99.1342	99.7821	56.9822	458	4	458	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3492	99.1342	99.5652	27.5591	458	4	458	2	2	100.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.1711	99.1342	87.8846	63.1467	458	4	457	63	48	76.1905
astatham-gatk	INDEL	*	map_l150_m1_e0	homalt	99.0270	99.1342	98.9201	88.5254	458	4	458	5	3	60.0000
bgallagher-sentieon	INDEL	*	map_l150_m1_e0	homalt	98.9201	99.1342	98.7069	88.3417	458	4	458	6	3	50.0000
bgallagher-sentieon	INDEL	D1_5	map_l100_m1_e0	*	98.7880	99.1342	98.4442	84.0520	1832	16	1835	29	6	20.6897
jli-custom	SNP	*	map_l100_m2_e0	het	99.2823	99.1336	99.4314	64.8428	45997	402	45994	263	62	23.5741
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5648	99.1334	100.0000	32.4169	4576	40	4572	0	0
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5369	99.1334	99.9436	40.3106	10639	93	10639	6	1	16.6667
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.4570	99.1333	99.7828	28.5493	915	8	919	2	2	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4480	99.1333	99.7647	74.0763	2974	26	2968	7	3	42.8571
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5647	99.1333	100.0000	30.5303	915	8	917	0	0
egarrison-hhga	SNP	tv	map_siren	het	99.4896	99.1331	99.8486	55.6665	28361	248	28361	43	15	34.8837
eyeh-varpipe	INDEL	D1_5	segdup	het	99.2846	99.1329	99.4366	93.3025	686	6	706	4	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.4204	99.1329	99.7095	36.8209	1715	15	1716	5	4	80.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5646	99.1329	100.0000	30.3228	1715	15	1705	0	0
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5646	99.1329	100.0000	74.3783	343	3	340	0	0
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.2764	99.1329	99.4203	34.7086	1715	15	1715	10	10	100.0000
ckim-gatk	INDEL	D1_5	map_l100_m2_e1	het	96.1455	99.1325	93.3333	89.3667	1257	11	1260	90	6	6.6667
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	het	98.4365	99.1325	97.7502	84.2651	1257	11	1260	29	2	6.8966
hfeng-pmm1	SNP	*	map_l100_m2_e1	het	99.4258	99.1322	99.7211	65.3522	46491	407	46480	130	32	24.6154
hfeng-pmm1	SNP	ti	map_l150_m2_e0	*	99.3647	99.1322	99.5983	75.0541	20334	178	20330	82	23	28.0488
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3072	99.1321	99.4829	51.2667	3655	32	3655	19	16	84.2105
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4050	99.1319	99.6795	63.7841	571	5	622	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	HG002complexvar	*	99.3660	99.1319	99.6013	57.4494	32431	284	32474	130	115	88.4615
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	het	99.0505	99.1317	98.9695	65.9806	29682	260	29675	309	6	1.9418
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.8694	99.1317	98.6084	82.6759	4110	36	4110	58	16	27.5862
hfeng-pmm1	INDEL	I1_5	HG002complexvar	het	99.4978	99.1313	99.8669	57.6162	18031	158	18012	24	10	41.6667
hfeng-pmm1	SNP	*	map_l150_m2_e1	*	99.3543	99.1307	99.5789	75.1677	31930	280	31924	135	37	27.4074
jlack-gatk	INDEL	*	map_l250_m2_e0	homalt	97.8541	99.1304	96.6102	95.0956	114	1	114	4	3	75.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2430	99.1304	99.3558	84.2935	2622	23	2622	17	7	41.1765
gduggal-bwavard	INDEL	D1_5	map_l125_m0_e0	het	88.6305	99.1304	80.1418	91.5077	342	3	339	84	8	9.5238
gduggal-bwafb	INDEL	*	map_l250_m2_e0	homalt	97.8541	99.1304	96.6102	95.7812	114	1	114	4	3	75.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.1304	99.5633	66.6181	228	2	228	1	1	100.0000
ndellapenna-hhga	INDEL	D1_5	*	het	97.6637	99.1299	96.2402	54.0039	86812	762	87337	3412	3186	93.3763
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.7044	99.1299	94.3948	61.8169	1595	14	1583	94	27	28.7234
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	homalt	99.5102	99.1299	99.8933	45.8849	13330	117	13110	14	9	64.2857
ciseli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.5171	99.1298	94.0386	44.7974	2734	24	2729	173	47	27.1676
jlack-gatk	SNP	*	map_l100_m2_e0	*	97.0473	99.1293	95.0510	75.5620	73320	644	73309	3817	291	7.6238
gduggal-bwavard	SNP	tv	*	het	99.1377	99.1291	99.1462	30.0519	586551	5153	584089	5030	1454	28.9066
gduggal-snapfb	SNP	*	HG002compoundhet	homalt	96.1466	99.1282	93.3392	44.8696	10688	94	10692	763	275	36.0419
dgrover-gatk	SNP	tv	map_l150_m2_e0	*	99.0452	99.1281	98.9624	78.7121	11256	99	11254	118	24	20.3390
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201
gduggal-bwafb	SNP	*	map_l100_m2_e0	*	99.0302	99.1280	98.9327	69.1496	73319	645	73321	791	163	20.6068
jli-custom	SNP	tv	map_l100_m2_e1	het	99.2181	99.1279	99.3085	65.9029	15799	139	15798	110	24	21.8182
dgrover-gatk	INDEL	*	map_l100_m2_e0	homalt	99.0099	99.1277	98.8924	84.9649	1250	11	1250	14	6	42.8571
hfeng-pmm1	SNP	*	map_l150_m2_e0	*	99.3518	99.1272	99.5773	75.1179	31574	278	31568	134	37	27.6119

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