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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 301 302 303 304 305 306 307 308 309 ... 1720 1721 » 15201-15250 / 86044 show all
ndellapenna-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4006	99.1437	99.6587	62.2119	27441	237	27449	94	60	63.8298
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2546	99.1437	99.3657	50.4529	2663	23	2663	17	0	0.0000
dgrover-gatk	SNP	ti	map_l150_m1_e0	het	99.0308	99.1431	98.9188	80.0370	12264	106	12260	134	29	21.6418
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.3771	99.1429	99.6124	57.9633	1041	9	1028	4	1	25.0000
gduggal-bwafb	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.8088	99.1429	96.5101	64.4371	17698	153	17754	642	126	19.6262
jli-custom	SNP	*	map_l100_m2_e1	het	99.2878	99.1428	99.4333	64.8837	46496	402	46493	265	62	23.3962
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.3750	99.1428	97.6190	80.4477	6824	59	6847	167	2	1.1976
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3391	99.1425	99.5364	69.3276	1503	13	1503	7	2	28.5714
ghariani-varprowl	SNP	*	map_l100_m1_e0	het	97.8610	99.1424	96.6122	73.4449	44970	389	44973	1577	254	16.1065
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.1764	99.1423	99.2106	64.9939	3121	27	3142	25	3	12.0000
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3482	99.1423	99.5550	73.6647	47857	414	47648	213	149	69.9531
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2598	99.1413	99.3785	84.5990	1501	13	1439	9	0	0.0000
ltrigg-rtg1	INDEL	D1_5	HG002complexvar	homalt	99.5497	99.1413	99.9615	53.6591	10507	91	10381	4	3	75.0000
dgrover-gatk	INDEL	*	map_l100_m2_e1	homalt	99.0253	99.1413	98.9097	85.0193	1270	11	1270	14	6	42.8571
jli-custom	SNP	ti	map_l100_m2_e0	het	99.3179	99.1411	99.4953	64.3096	30359	263	30357	154	38	24.6753
egarrison-hhga	SNP	ti	*	hetalt	98.9708	99.1409	98.8014	49.0846	577	5	577	7	7	100.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	het	99.1947	99.1407	99.2487	75.9543	8192	71	8190	62	6	9.6774
jli-custom	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	84.3102	346	3	346	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.5781	346	3	346	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
ndellapenna-hhga	INDEL	D1_5	map_l125_m1_e0	homalt	98.9986	99.1404	98.8571	84.4858	346	3	346	4	4	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4253	99.1404	99.7118	83.2690	346	3	346	1	1	100.0000
rpoplin-dv42	SNP	*	map_l100_m1_e0	het	99.2638	99.1402	99.3876	64.2170	44969	390	44957	277	141	50.9025
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0240	99.1401	98.9082	42.6607	5073	44	5073	56	56	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5328	99.1399	99.9287	67.1581	16829	146	16829	12	12	100.0000
astatham-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.5706	99.1399	92.2494	66.0177	2190	19	2190	184	181	98.3696
bgallagher-sentieon	INDEL	*	segdup	*	98.9462	99.1393	98.7539	94.5996	2534	22	2536	32	11	34.3750
dgrover-gatk	SNP	tv	map_l150_m2_e1	*	99.0574	99.1393	98.9756	78.7166	11403	99	11401	118	24	20.3390
eyeh-varpipe	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9228	99.1388	98.7077	45.0241	10015	87	9777	128	46	35.9375
gduggal-bwafb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3797	99.1386	99.6220	59.2352	20025	174	20030	76	54	71.0526
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4784	99.1386	99.8206	46.1563	6675	58	6677	12	6	50.0000
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.7942	99.1385	98.4523	64.5861	4258	37	4262	67	18	26.8657
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	het	99.0553	99.1379	98.9728	67.5282	30358	264	30351	315	6	1.9048
jlack-gatk	INDEL	*	map_l250_m2_e1	homalt	97.8723	99.1379	96.6387	95.1744	115	1	115	4	3	75.0000
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3506	99.1379	99.5643	72.3494	460	4	457	2	0	0.0000
gduggal-bwafb	INDEL	*	map_l250_m2_e1	homalt	97.8723	99.1379	96.6387	95.8709	115	1	115	4	3	75.0000
bgallagher-sentieon	SNP	tv	map_l150_m0_e0	*	98.4884	99.1375	97.8477	81.2755	4138	36	4137	91	10	10.9890
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4319	99.1366	99.7290	37.0539	18026	157	18031	49	28	57.1429
egarrison-hhga	SNP	ti	HG002compoundhet	hetalt	99.5663	99.1364	100.0000	22.9530	574	5	574	0	0
hfeng-pmm1	SNP	ti	map_l150_m2_e1	*	99.3663	99.1362	99.5975	75.1263	20544	179	20540	83	23	27.7108
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	*	98.4147	99.1357	97.7041	87.0012	1147	10	1149	27	4	14.8148
gduggal-bwafb	SNP	*	map_l100_m2_e1	*	99.0356	99.1356	98.9358	69.1822	74091	646	74093	797	164	20.5772
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4872	99.1352	99.8416	45.8405	2522	22	2522	4	0	0.0000
rpoplin-dv42	SNP	ti	map_l100_m1_e0	het	99.3390	99.1350	99.5438	63.8948	29683	259	29675	136	82	60.2941
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	64.4853	99.1348	47.7839	65.3135	1375	12	1380	1508	7	0.4642
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	94.0681	99.1348	89.4942	76.3243	1375	12	1380	162	1	0.6173
dgrover-gatk	INDEL	I1_5	map_siren	*	99.2843	99.1348	99.4343	81.3909	2979	26	2988	17	5	29.4118
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4163	99.1347	99.6996	67.2044	2635	23	2655	8	4	50.0000

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