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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 300 301 302 303 304 305 306 307 308 ... 1720 1721 » 15151-15200 / 86044 show all
gduggal-bwafb	SNP	tv	map_l100_m1_e0	*	98.8766	99.1511	98.6037	68.5198	24293	208	24293	344	55	15.9884
dgrover-gatk	SNP	*	map_l150_m1_e0	het	98.9459	99.1510	98.7416	80.1493	19152	164	19146	244	49	20.0820
jmaeng-gatk	SNP	*	HG002complexvar	*	99.5566	99.1508	99.9656	19.5091	747975	6406	747823	257	106	41.2451
ghariani-varprowl	SNP	tv	map_l125_m1_e0	het	96.7384	99.1507	94.4408	79.1185	10040	86	10040	591	91	15.3976
jli-custom	SNP	ti	map_l100_m2_e1	het	99.3237	99.1505	99.4976	64.3340	30697	263	30695	155	38	24.5161
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3917	99.1505	99.6341	69.2077	817	7	817	3	1	33.3333
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4522	99.1505	99.7558	69.0710	817	7	817	2	1	50.0000
rpoplin-dv42	SNP	tv	map_l100_m1_e0	het	99.1180	99.1503	99.0858	64.8238	15286	131	15282	141	59	41.8440
ckim-dragen	SNP	tv	map_l100_m1_e0	het	98.0692	99.1503	97.0114	73.5010	15286	131	15289	471	32	6.7941
ckim-gatk	INDEL	I1_5	segdup	*	98.0421	99.1501	96.9585	95.6110	1050	9	1052	33	2	6.0606
cchapple-custom	INDEL	I1_5	segdup	*	99.3368	99.1501	99.5243	94.3140	1050	9	1046	5	3	60.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2624	99.1501	99.3749	64.2935	6183	53	6200	39	5	12.8205
jli-custom	INDEL	I1_5	segdup	*	99.3377	99.1501	99.5261	94.0200	1050	9	1050	5	2	40.0000
hfeng-pmm3	INDEL	I1_5	segdup	*	99.4321	99.1501	99.7156	94.0254	1050	9	1052	3	2	66.6667
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0365	99.1497	98.9235	87.9760	1749	15	1746	19	14	73.6842
ndellapenna-hhga	INDEL	D1_5	*	homalt	99.1101	99.1497	99.0705	58.8372	48510	416	48497	455	260	57.1429
ckim-gatk	INDEL	I1_5	*	*	99.3427	99.1491	99.5371	59.3239	149382	1282	149430	695	401	57.6978
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4666	99.1489	99.7863	69.8065	466	4	467	1	1	100.0000
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6377	99.1486	98.1322	75.2542	47860	411	47652	907	540	59.5369
dgrover-gatk	SNP	*	map_l150_m1_e0	homalt	99.5103	99.1484	99.8749	68.8906	11177	96	11177	14	10	71.4286
hfeng-pmm1	INDEL	D1_5	*	*	99.5052	99.1482	99.8648	57.2252	145495	1250	145547	197	112	56.8528
cchapple-custom	SNP	ti	HG002compoundhet	homalt	99.5445	99.1480	99.9443	27.6293	7331	63	7173	4	4	100.0000
ltrigg-rtg2	SNP	*	map_siren	*	99.4570	99.1479	99.7681	47.8411	144981	1246	144975	337	38	11.2760
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3667	99.1478	99.5866	78.9281	6050	52	6022	25	8	32.0000
egarrison-hhga	SNP	*	map_l250_m1_e0	homalt	99.4705	99.1474	99.7957	86.3912	2442	21	2442	5	5	100.0000
raldana-dualsentieon	SNP	*	map_l250_m1_e0	homalt	99.4502	99.1474	99.7549	84.1101	2442	21	2442	6	3	50.0000
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	het	99.0592	99.1473	98.9712	67.5574	30696	264	30689	319	6	1.8809
rpoplin-dv42	SNP	ti	map_l100_m2_e1	het	99.3494	99.1473	99.5523	65.6527	30696	264	30688	138	83	60.1449
dgrover-gatk	SNP	*	map_l150_m1_e0	*	99.1521	99.1473	99.1569	77.1188	30348	261	30342	258	59	22.8682
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5717	99.1471	100.0000	85.6437	465	4	465	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.4468	99.1471	95.8038	68.8013	3836	33	3790	166	160	96.3855
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.1071	465	4	465	1	1	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5717	99.1471	100.0000	79.3245	465	4	453	0	0
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.6439	465	4	465	1	0	0.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.5145	465	4	465	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8289	99.1468	98.5131	59.7388	7321	63	7288	110	106	96.3636
egarrison-hhga	SNP	tv	map_l250_m2_e0	homalt	99.4647	99.1462	99.7852	87.5551	929	8	929	2	2	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5563	99.1458	99.9703	67.1493	16830	145	16830	5	5	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5563	99.1458	99.9703	67.1493	16830	145	16830	5	5	100.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e0	het	99.3487	99.1444	99.5539	65.6465	30360	262	30352	136	82	60.2941
hfeng-pmm3	INDEL	D1_5	*	*	99.5137	99.1441	99.8861	56.7122	145489	1256	145542	166	109	65.6627
ndellapenna-hhga	SNP	tv	HG002compoundhet	homalt	98.4034	99.1440	97.6737	43.8897	3359	29	3359	80	78	97.5000
hfeng-pmm3	SNP	*	map_l150_m0_e0	*	99.1727	99.1439	99.2015	79.7142	11929	103	11926	96	9	9.3750
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	18.1946	579	5	580	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	17.6136	579	5	580	0	0
gduggal-bwafb	INDEL	D1_5	map_siren	homalt	98.8048	99.1438	98.4681	82.4522	1158	10	1157	18	12	66.6667
jmaeng-gatk	INDEL	D1_5	map_siren	homalt	99.3571	99.1438	99.5712	81.3141	1158	10	1161	5	5	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	25.7325	579	5	583	0	0

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