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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 299 300 301 302 303 304 305 306 307 ... 1720 1721 » 15101-15150 / 86044 show all
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	22.9917	235	2	278	0	0
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	24.0385	235	2	237	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	23.6246	235	2	236	0	0
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.6852	99.1559	98.2189	80.5400	14448	123	14448	262	15	5.7252
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.6852	99.1559	98.2189	80.5400	14448	123	14448	262	15	5.7252
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5470	99.1558	99.9413	57.3410	17032	145	17028	10	8	80.0000
hfeng-pmm2	INDEL	D1_5	*	*	99.4930	99.1557	99.8326	57.8117	145506	1239	145558	244	146	59.8361
hfeng-pmm2	SNP	*	map_l150_m2_e0	het	98.9416	99.1556	98.7286	79.5932	19963	170	19957	257	23	8.9494
bgallagher-sentieon	SNP	tv	map_l125_m0_e0	*	98.6421	99.1555	98.1340	76.7581	6575	56	6574	125	19	15.2000
jli-custom	INDEL	D1_5	map_l100_m1_e0	homalt	99.3232	99.1554	99.4915	81.9902	587	5	587	3	3	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3862	99.1554	99.6182	87.6455	2348	20	2348	9	8	88.8889
ckim-gatk	INDEL	D1_5	map_l100_m1_e0	homalt	99.3232	99.1554	99.4915	83.5517	587	5	587	3	2	66.6667
dgrover-gatk	INDEL	D1_5	map_l100_m1_e0	homalt	99.4073	99.1554	99.6604	83.4225	587	5	587	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l100_m1_e0	homalt	99.3232	99.1554	99.4915	83.5517	587	5	587	3	2	66.6667
bgallagher-sentieon	SNP	*	map_l125_m0_e0	het	98.5131	99.1551	97.8793	78.7667	12557	107	12554	272	40	14.7059
ckim-gatk	INDEL	*	*	*	99.2271	99.1551	99.2992	60.7185	341631	2911	341492	2410	1553	64.4398
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8983	99.1544	98.6435	64.3687	8325	71	8290	114	105	92.1053
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5515	99.1544	99.9518	47.1169	6215	53	6215	3	3	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.7864	99.1544	98.4212	63.6442	8325	71	8291	133	121	90.9774
asubramanian-gatk	INDEL	I1_5	segdup	homalt	99.3644	99.1543	99.5754	92.7483	469	4	469	2	2	100.0000
egarrison-hhga	SNP	tv	map_l250_m2_e1	homalt	99.4698	99.1543	99.7872	87.6462	938	8	938	2	2	100.0000
rpoplin-dv42	INDEL	I1_5	segdup	homalt	99.1543	99.1543	99.1543	92.6746	469	4	469	4	4	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3640	99.1541	99.5747	61.1334	1641	14	1639	7	4	57.1429
hfeng-pmm3	INDEL	D1_5	map_l100_m0_e0	het	98.7377	99.1540	98.3250	82.6403	586	5	587	10	1	10.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.4158	99.1539	99.6791	63.8395	9610	82	9630	31	5	16.1290
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9876	99.1538	98.8219	62.9494	11014	94	10989	131	41	31.2977
dgrover-gatk	SNP	*	map_l150_m2_e0	homalt	99.5153	99.1538	99.8795	71.2083	11600	99	11600	14	10	71.4286
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.1713	99.1535	99.1891	87.0415	2694	23	2691	22	15	68.1818
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4859	99.1534	99.8206	46.3856	6676	57	6678	12	5	41.6667
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5749	99.1533	100.0000	79.4702	1054	9	1054	0	0
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4305	99.1533	99.7093	77.3336	1054	9	1029	3	3	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4810	99.1533	99.8108	81.4724	1054	9	1055	2	1	50.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4758	99.1531	99.8007	37.5709	18029	154	18026	36	2	5.5556
ghariani-varprowl	SNP	*	map_l100_m2_e0	het	97.8332	99.1530	96.5480	75.0125	46006	393	46009	1645	255	15.5015
rpoplin-dv42	SNP	*	map_l100_m2_e0	het	99.2759	99.1530	99.3992	65.9847	46006	393	45994	278	141	50.7194
hfeng-pmm2	SNP	ti	map_l125_m0_e0	het	98.8238	99.1529	98.4969	78.6095	8193	70	8191	125	11	8.8000
hfeng-pmm2	SNP	ti	map_l250_m2_e1	*	98.8122	99.1529	98.4739	90.0047	5033	43	5033	78	9	11.5385
hfeng-pmm3	SNP	ti	map_l250_m2_e1	*	99.1724	99.1529	99.1920	88.8826	5033	43	5033	41	5	12.1951
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.3361	351	3	352	1	1	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.1606	351	3	352	1	1	100.0000
hfeng-pmm2	SNP	*	map_l150_m0_e0	*	98.8358	99.1523	98.5214	81.5215	11930	102	11927	179	19	10.6145
hfeng-pmm2	INDEL	*	*	het	99.3911	99.1521	99.6313	58.9414	192487	1646	192126	711	412	57.9466
asubramanian-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.4134	99.1518	97.6860	71.1060	3507	30	4137	98	96	97.9592
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.0646	99.1518	98.9776	67.7712	3507	30	3485	36	36	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.4390	99.1515	95.7845	70.5720	818	7	818	36	34	94.4444
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.4390	99.1515	95.7845	70.5720	818	7	818	36	34	94.4444
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3045	99.1512	99.4582	87.3902	1285	11	1285	7	6	85.7143
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6903	99.1511	98.2338	72.3424	1168	10	1168	21	21	100.0000
jlack-gatk	SNP	tv	map_l100_m1_e0	*	96.1408	99.1511	93.3080	76.0138	24293	208	24289	1742	100	5.7405

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