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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 296 297 298 299 300 301 302 303 304 ... 1720 1721 » 14951-15000 / 86044 show all
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4851	99.1786	99.7934	64.5161	483	4	483	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5875	99.1784	100.0000	85.2685	845	7	845	0	0
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4703	99.1784	99.7639	83.7209	845	7	845	2	1	50.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	86.4854	99.1784	76.6727	86.8957	845	7	848	258	212	82.1705
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.7237	845	7	845	1	0	0.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5875	99.1784	100.0000	84.7445	845	7	845	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.5845	845	7	845	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5726	99.1784	99.9701	49.4910	10019	83	10019	3	3	100.0000
dgrover-gatk	INDEL	*	segdup	*	99.0625	99.1784	98.9470	94.7737	2535	21	2537	27	10	37.0370
gduggal-snapplat	SNP	tv	func_cds	homalt	99.5875	99.1784	100.0000	26.2009	1690	14	1690	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4703	99.1784	99.7639	84.6391	845	7	845	2	2	100.0000
ckim-dragen	INDEL	*	segdup	*	97.1040	99.1784	95.1146	95.2650	2535	21	2531	130	14	10.7692
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5289	99.1784	99.8818	84.5845	845	7	845	1	1	100.0000
dgrover-gatk	SNP	ti	map_l150_m1_e0	*	99.2284	99.1782	99.2787	76.9359	19550	162	19546	142	35	24.6479
rpoplin-dv42	INDEL	D1_5	map_siren	*	99.0944	99.1782	99.0107	80.6593	3500	29	3503	35	15	42.8571
rpoplin-dv42	SNP	tv	map_l100_m2_e1	het	99.1406	99.1781	99.1032	66.6722	15807	131	15803	143	59	41.2587
dgrover-gatk	SNP	ti	map_l150_m2_e1	het	99.0483	99.1779	98.9191	81.1057	12908	107	12904	141	30	21.2766
hfeng-pmm1	SNP	ti	map_l100_m0_e0	*	99.4038	99.1778	99.6308	67.2084	21592	179	21589	80	22	27.5000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1798	99.1774	99.1822	88.3012	844	7	849	7	7	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6558	99.1774	98.1395	88.0655	844	7	844	16	6	37.5000
dgrover-gatk	SNP	*	map_l150_m2_e1	*	99.1741	99.1773	99.1710	78.4616	31945	265	31939	267	60	22.4719
jlack-gatk	SNP	tv	map_l100_m2_e1	*	96.2124	99.1773	93.4195	77.4540	25075	208	25071	1766	100	5.6625
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5869	99.1772	100.0000	48.3179	1567	13	1567	0	0
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	het	98.6693	99.1771	98.1668	78.4213	8195	68	8193	153	25	16.3399
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.6377	99.1766	96.1458	58.9707	1325	11	1372	55	1	1.8182
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5118	99.1766	99.8493	51.4275	1325	11	1325	2	0	0.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2881	99.1766	99.3998	50.9385	1325	11	1325	8	0	0.0000
ghariani-varprowl	SNP	tv	map_l125_m2_e0	het	96.7579	99.1764	94.4546	80.4692	10356	86	10356	608	93	15.2961
ckim-dragen	SNP	ti	map_l125_m0_e0	homalt	99.4419	99.1761	99.7092	62.9046	4454	37	4457	13	12	92.3077
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4490	99.1758	99.7238	84.2814	361	3	361	1	1	100.0000
ndellapenna-hhga	INDEL	D1_5	map_l125_m2_e0	homalt	99.0398	99.1758	98.9041	85.4408	361	3	361	4	4	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4552	361	3	361	2	2	100.0000
jli-custom	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	85.1837	361	3	361	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2813	99.1758	99.3872	70.5555	3730	31	3730	23	22	95.6522
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2813	99.1758	99.3872	70.5555	3730	31	3730	23	22	95.6522
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	80.5780	99.1753	67.8540	65.4237	6133	51	6191	2933	43	1.4661
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9872	99.1753	96.8273	68.0073	3247	27	3235	106	103	97.1698
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.5168	99.1748	97.8675	68.3868	3846	32	3855	84	19	22.6190
ckim-gatk	SNP	*	HG002complexvar	*	99.5695	99.1746	99.9675	19.4723	748154	6227	748002	243	101	41.5638
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5463	99.1745	99.9208	47.8198	2523	21	2523	2	0	0.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2798	99.1742	99.3856	72.8070	1321	11	1294	8	6	75.0000
dgrover-gatk	SNP	*	map_l100_m0_e0	homalt	99.5293	99.1738	99.8873	60.6890	11524	96	11524	13	9	69.2308
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.8845	99.1738	98.5968	78.6472	6602	55	6605	94	1	1.0638
raldana-dualsentieon	SNP	ti	map_l125_m2_e0	*	99.1246	99.1738	99.0754	71.0207	30008	250	30004	280	11	3.9286
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e0	het	91.9540	99.1736	85.7143	97.3953	120	1	120	20	1	5.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5851	99.1736	100.0000	69.2994	240	2	241	0	0
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3797	99.1736	99.5868	69.7500	240	2	241	1	1	100.0000
astatham-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	88.2324	240	2	240	1	1	100.0000

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