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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 294 295 296 297 298 299 300 301 302 ... 1720 1721 » 14851-14900 / 86044 show all
hfeng-pmm1	INDEL	*	*	het	99.4245	99.1923	99.6578	58.3471	192565	1568	192194	660	374	56.6667
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5537	99.1915	99.9186	53.5276	6134	50	6134	5	0	0.0000
eyeh-varpipe	SNP	ti	map_l250_m1_e0	het	98.4913	99.1914	97.8011	90.9985	2944	24	2891	65	4	6.1539
egarrison-hhga	SNP	ti	map_l250_m1_e0	homalt	99.5006	99.1910	99.8121	86.3830	1594	13	1594	3	3	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3632	99.1908	99.5362	36.2528	1716	14	1717	8	6	75.0000
dgrover-gatk	SNP	ti	map_l150_m2_e0	*	99.2366	99.1907	99.2825	78.2548	20346	166	20342	147	36	24.4898
egarrison-hhga	SNP	*	map_l250_m2_e1	homalt	99.5018	99.1906	99.8149	87.6004	2696	22	2696	5	5	100.0000
raldana-dualsentieon	SNP	*	map_l250_m2_e1	homalt	99.4834	99.1906	99.7779	85.3835	2696	22	2696	6	3	50.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.1031	99.1903	99.0160	51.1670	5635	46	5635	56	56	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.6437	99.1903	96.1445	69.5777	4410	36	4364	175	167	95.4286
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8574	99.1901	98.5270	64.5573	8328	68	8294	124	111	89.5161
qzeng-custom	SNP	*	*	het	99.4239	99.1899	99.6590	25.4299	1858423	15178	1850061	6331	818	12.9205
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
dgrover-gatk	SNP	*	map_l150_m2_e1	het	98.9757	99.1897	98.7625	81.1801	20198	165	20192	253	50	19.7628
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
ndellapenna-hhga	SNP	tv	map_l125_m0_e0	homalt	99.5256	99.1896	99.8640	68.2316	2203	18	2203	3	2	66.6667
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	homalt	99.5439	99.1894	99.9010	45.4107	13338	109	13119	13	8	61.5385
egarrison-hhga	SNP	tv	map_l100_m2_e1	*	99.4981	99.1892	99.8090	65.1604	25078	205	25078	48	19	39.5833
jmaeng-gatk	INDEL	D6_15	*	het	98.5809	99.1891	97.9801	63.8389	11498	94	11448	236	191	80.9322
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.2421	99.1889	97.3132	58.3402	2935	24	2970	82	0	0.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5343	99.1889	99.8821	57.8109	856	7	847	1	1	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5927	99.1886	100.0000	51.1512	489	4	488	0	0
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7434	99.1886	98.3021	75.3952	5379	44	5095	88	22	25.0000
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7434	99.1886	98.3021	75.3952	5379	44	5095	88	22	25.0000
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3672	99.1883	99.5468	74.2740	63908	523	63921	291	257	88.3162
dgrover-gatk	SNP	tv	map_l100_m0_e0	*	99.0852	99.1880	98.9825	72.6937	10994	90	10993	113	23	20.3540
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8560	99.1874	98.5268	58.9697	7324	60	7290	109	104	95.4128
astatham-gatk	INDEL	*	map_l150_m2_e1	homalt	98.9858	99.1870	98.7854	89.4512	488	4	488	6	4	66.6667
bgallagher-sentieon	INDEL	*	map_l150_m2_e1	homalt	98.8855	99.1870	98.5859	89.3019	488	4	488	7	4	57.1429
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0127	99.1870	94.9318	60.8397	488	4	487	26	25	96.1538
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.5178	99.1870	97.8576	69.7090	1342	11	1416	31	10	32.2581
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4565	99.1870	99.7275	80.7349	366	3	366	1	1	100.0000
hfeng-pmm2	INDEL	*	map_l150_m2_e1	homalt	98.9858	99.1870	98.7854	88.2938	488	4	488	6	4	66.6667
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4538	99.1867	99.7223	73.1991	63907	524	63923	178	156	87.6404
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3750	99.1863	99.5644	51.3896	3657	30	3657	16	13	81.2500
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	94.7282	99.1860	90.6540	71.0721	3899	32	3909	403	1	0.2481
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.5725	99.1852	92.2138	66.1587	2191	18	2191	185	182	98.3784
ckim-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.5308	99.1852	92.1362	66.1398	2191	18	2191	187	184	98.3957
ghariani-varprowl	SNP	tv	map_l125_m2_e1	het	96.7733	99.1851	94.4760	80.5468	10467	86	10467	612	94	15.3595
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5327	99.1851	99.8828	53.0235	4260	35	4260	5	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.0504	99.1851	96.9413	58.5086	4260	35	4342	137	1	0.7299
egarrison-hhga	SNP	tv	map_l100_m2_e0	*	99.4951	99.1851	99.8071	65.1309	24829	204	24829	48	19	39.5833
ckim-vqsr	INDEL	*	map_l100_m1_e0	homalt	99.2254	99.1850	99.2659	84.2639	1217	10	1217	9	5	55.5556
jli-custom	INDEL	*	map_l100_m1_e0	homalt	99.1850	99.1850	99.1850	82.2765	1217	10	1217	10	6	60.0000
ckim-gatk	INDEL	*	map_l100_m1_e0	homalt	99.1850	99.1850	99.1850	84.2531	1217	10	1217	10	6	60.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.0950	99.1848	99.0054	86.2506	1095	9	1095	11	4	36.3636
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1395	99.1848	99.0942	85.7787	1095	9	1094	10	8	80.0000
rpoplin-dv42	INDEL	D1_5	segdup	*	99.4999	99.1840	99.8179	94.3988	1094	9	1096	2	2	100.0000
ckim-vqsr	INDEL	D1_5	segdup	*	99.1399	99.1840	99.0958	96.1257	1094	9	1096	10	2	20.0000

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