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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 293 294 295 296 297 298 299 300 301 ... 1720 1721 » 14801-14850 / 86044 show all
dgrover-gatk	SNP	ti	map_l150_m2_e1	*	99.2396	99.1990	99.2803	78.3146	20557	166	20553	149	36	24.1611
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5979	99.1989	100.0000	79.0898	1486	12	1507	0	0
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5646	99.1989	99.9329	79.3662	1486	12	1490	1	1	100.0000
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
ckim-gatk	SNP	*	*	homalt	99.5941	99.1985	99.9929	17.5422	1170702	9459	1170679	83	52	62.6506
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5327	99.1984	99.8692	31.8675	4579	37	4580	6	1	16.6667
qzeng-custom	SNP	ti	*	het	99.4567	99.1981	99.7166	23.5601	1271618	10279	1269681	3608	520	14.4124
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.6551	99.1981	98.1180	73.7453	19422	157	19551	375	40	10.6667
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.6551	99.1981	98.1180	73.7453	19422	157	19551	375	40	10.6667
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4638	99.1979	99.7312	59.5652	371	3	371	1	0	0.0000
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4064	99.1978	99.6159	41.7997	7296	59	7261	28	6	21.4286
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3235	99.1976	99.4496	87.1665	2349	19	2349	13	13	100.0000
gduggal-bwaplat	SNP	*	func_cds	homalt	99.5972	99.1976	100.0000	22.2746	6923	56	6923	0	0
jmaeng-gatk	SNP	tv	segdup	homalt	99.4735	99.1970	99.7516	89.7966	3212	26	3212	8	8	100.0000
ckim-gatk	SNP	tv	segdup	homalt	99.5043	99.1970	99.8135	89.9144	3212	26	3212	6	6	100.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	98.5273	99.1969	97.8668	72.2743	4817	39	4863	106	20	18.8679
egarrison-hhga	SNP	tv	*	hetalt	99.1394	99.1963	99.0826	48.4024	864	7	864	8	8	100.0000
egarrison-hhga	SNP	*	*	hetalt	99.1394	99.1963	99.0826	48.4024	864	7	864	8	8	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.4729	99.1955	97.7608	76.5892	28481	231	28728	658	53	8.0547
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4729	99.1955	97.7608	76.5892	28481	231	28728	658	53	8.0547
raldana-dualsentieon	SNP	*	map_l100_m1_e0	het	99.0827	99.1953	98.9703	66.7199	44994	365	44983	468	7	1.4957
bgallagher-sentieon	SNP	*	map_l125_m0_e0	*	98.8636	99.1953	98.5342	75.8607	19229	156	19226	286	50	17.4825
ndellapenna-hhga	SNP	*	map_siren	*	99.5283	99.1937	99.8651	53.0102	145049	1179	145051	196	89	45.4082
ndellapenna-hhga	INDEL	D1_5	map_l125_m2_e1	homalt	99.0604	99.1935	98.9276	85.4807	369	3	369	4	4	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3435	99.1935	99.4939	70.5690	984	8	983	5	1	20.0000
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	88.0424	246	2	246	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	88.1510	246	2	246	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.3538	99.1935	99.5146	84.2025	615	5	615	3	2	66.6667
ckim-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
jli-custom	INDEL	D1_5	map_l100_m2_e1	homalt	99.3538	99.1935	99.5146	82.8286	615	5	615	3	3	100.0000
jli-custom	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	85.1719	369	3	369	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	86.9679	246	2	246	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l100_m2_e1	homalt	99.1935	99.1935	99.1935	83.6066	615	5	615	5	4	80.0000
dgrover-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.4341	99.1935	99.6759	84.1347	615	5	615	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l100_m2_e1	homalt	99.3538	99.1935	99.5146	84.2025	615	5	615	3	2	66.6667
ckim-vqsr	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e1	homalt	99.4609	99.1935	99.7297	84.2620	369	3	369	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
hfeng-pmm1	SNP	*	map_l100_m0_e0	*	99.3989	99.1931	99.6055	67.8013	32576	265	32572	129	37	28.6822
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4849	99.1930	99.7786	75.9411	1352	11	1352	3	1	33.3333
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1930	99.1930	99.1930	76.9218	1352	11	1352	11	7	63.6364
ndellapenna-hhga	SNP	*	map_l150_m0_e0	homalt	99.5215	99.1930	99.8523	72.7346	4056	33	4056	6	5	83.3333
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5215	99.1930	99.8523	76.2248	1352	11	1352	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.4085	99.1930	99.6249	78.2367	1352	11	1328	5	3	60.0000
jmaeng-gatk	INDEL	D1_5	HG002complexvar	*	99.4486	99.1930	99.7055	58.6476	32451	264	32505	96	76	79.1667
egarrison-hhga	INDEL	D1_5	*	homalt	99.1875	99.1927	99.1824	59.4207	48531	395	48522	400	203	50.7500
hfeng-pmm2	SNP	ti	map_l150_m2_e0	het	99.0233	99.1926	98.8546	79.5912	12777	104	12773	148	13	8.7838
hfeng-pmm3	INDEL	*	*	het	99.4705	99.1923	99.7504	58.0356	192565	1568	192191	481	313	65.0728

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