PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14701-14750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | het | 99.2946 | 99.2143 | 99.3751 | 76.6790 | 20203 | 160 | 20197 | 127 | 13 | 10.2362 | |
| bgallagher-sentieon | INDEL | * | * | * | 99.2678 | 99.2143 | 99.3213 | 59.6036 | 341835 | 2707 | 341703 | 2335 | 1924 | 82.3983 | |
| bgallagher-sentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.5366 | 99.2141 | 97.8682 | 84.8680 | 505 | 4 | 505 | 11 | 5 | 45.4545 | |
| astatham-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7292 | 99.2141 | 98.2490 | 85.0971 | 505 | 4 | 505 | 9 | 5 | 55.5556 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | homalt | 99.0173 | 99.2141 | 98.8212 | 82.1404 | 505 | 4 | 503 | 6 | 3 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | homalt | 98.6328 | 99.2141 | 98.0583 | 83.0759 | 505 | 4 | 505 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | SNP | tv | map_siren | * | 98.2281 | 99.2140 | 97.2616 | 65.3754 | 45569 | 361 | 45570 | 1283 | 183 | 14.2634 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.0924 | 99.2138 | 91.2996 | 66.9963 | 2524 | 20 | 2529 | 241 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | homalt | 99.1487 | 99.2136 | 99.0838 | 87.3090 | 757 | 6 | 757 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | homalt | 99.2136 | 99.2136 | 99.2136 | 87.3235 | 757 | 6 | 757 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1869 | 99.2134 | 99.1605 | 78.4314 | 6054 | 48 | 6024 | 51 | 24 | 47.0588 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | het | 99.0916 | 99.2132 | 98.9703 | 68.3138 | 46529 | 369 | 46518 | 484 | 7 | 1.4463 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 52.2491 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0545 | 99.2126 | 96.9231 | 76.0589 | 126 | 1 | 126 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6532 | 99.2126 | 98.1002 | 87.4743 | 1134 | 9 | 1136 | 22 | 5 | 22.7273 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 54.0000 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2126 | 99.2126 | 99.2126 | 79.4830 | 126 | 1 | 126 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.3820 | 99.2126 | 90.0000 | 53.0201 | 126 | 1 | 126 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0423 | 99.2126 | 96.8992 | 68.9904 | 126 | 1 | 125 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | het | 99.0069 | 99.2124 | 98.8022 | 73.2241 | 21038 | 167 | 21034 | 255 | 23 | 9.0196 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5615 | 99.2123 | 99.9132 | 66.4238 | 11461 | 91 | 11511 | 10 | 8 | 80.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5615 | 99.2123 | 99.9132 | 66.4238 | 11461 | 91 | 11511 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | SNP | * | func_cds | * | 99.4779 | 99.2121 | 99.7452 | 34.2475 | 18007 | 143 | 18007 | 46 | 4 | 8.6957 | |
| ciseli-custom | SNP | ti | func_cds | het | 98.4573 | 99.2121 | 97.7138 | 25.9135 | 8437 | 67 | 8420 | 197 | 2 | 1.0152 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | * | 99.2301 | 99.2113 | 99.2490 | 79.5379 | 7799 | 62 | 7797 | 59 | 6 | 10.1695 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9116 | 99.2110 | 98.6139 | 86.9408 | 503 | 4 | 498 | 7 | 6 | 85.7143 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7242 | 99.2110 | 98.2422 | 85.7580 | 503 | 4 | 503 | 9 | 2 | 22.2222 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | het | 98.8473 | 99.2107 | 98.4865 | 81.3098 | 7290 | 58 | 7288 | 112 | 20 | 17.8571 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e0 | het | 99.2915 | 99.2103 | 99.3729 | 76.6202 | 19974 | 159 | 19968 | 126 | 13 | 10.3175 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5400 | 99.2100 | 99.8721 | 70.2148 | 30518 | 243 | 30461 | 39 | 32 | 82.0513 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.5188 | 99.2099 | 99.8296 | 87.5758 | 1758 | 14 | 1758 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | * | homalt | 98.3624 | 99.2096 | 97.5295 | 55.4016 | 6276 | 50 | 6277 | 159 | 146 | 91.8239 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3666 | 99.2095 | 99.5242 | 88.1418 | 1255 | 10 | 1255 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | * | * | * | 99.5934 | 99.2091 | 99.9807 | 19.0428 | 3030461 | 24158 | 3030315 | 584 | 162 | 27.7397 | |
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | * | 99.4515 | 99.2091 | 99.6951 | 68.8149 | 29103 | 232 | 29099 | 89 | 25 | 28.0899 | |
| jpowers-varprowl | SNP | * | segdup | * | 98.1671 | 99.2090 | 97.1467 | 91.9113 | 27845 | 222 | 27851 | 818 | 71 | 8.6797 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6029 | 99.2089 | 100.0000 | 43.0390 | 3637 | 29 | 3625 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | * | 98.9758 | 99.2086 | 98.7441 | 75.3623 | 12661 | 101 | 12659 | 161 | 31 | 19.2547 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3833 | 99.2084 | 86.4368 | 60.3102 | 376 | 3 | 376 | 59 | 59 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.0000 | 99.2084 | 89.3112 | 60.6909 | 376 | 3 | 376 | 45 | 44 | 97.7778 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.7656 | 99.2084 | 88.8889 | 61.0497 | 376 | 3 | 376 | 47 | 46 | 97.8723 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.3538 | 99.2084 | 89.9522 | 60.9346 | 376 | 3 | 376 | 42 | 42 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.7656 | 99.2084 | 88.8889 | 61.0497 | 376 | 3 | 376 | 47 | 46 | 97.8723 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4954 | 99.2083 | 99.7842 | 37.6168 | 7393 | 59 | 7397 | 16 | 10 | 62.5000 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.2928 | 99.2077 | 91.6751 | 67.8866 | 10017 | 80 | 9999 | 908 | 277 | 30.5066 | |