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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 290 291 292 293 294 295 296 297 298 ... 1720 1721 » 14651-14700 / 86044 show all
ckim-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2248	99.2248	99.2248	63.9161	256	2	256	2	2	100.0000
hfeng-pmm1	SNP	ti	map_l125_m2_e1	*	99.4622	99.2247	99.7008	70.5014	30332	237	30328	91	25	27.4725
ndellapenna-hhga	INDEL	I1_5	*	het	99.3796	99.2245	99.5353	57.8169	78428	613	78394	366	178	48.6339
ckim-gatk	SNP	ti	HG002complexvar	*	99.5943	99.2243	99.9671	17.9110	504492	3944	504432	166	74	44.5783
hfeng-pmm1	SNP	tv	map_l100_m0_e0	*	99.3900	99.2241	99.5564	68.9143	10998	86	10997	49	15	30.6122
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.4581	99.2238	97.7041	73.3786	767	6	766	18	3	16.6667
gduggal-bwavard	SNP	ti	func_cds	homalt	99.6099	99.2227	100.0000	20.4486	5234	41	5213	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.9380	99.2225	98.6552	35.2022	3956	31	3888	53	17	32.0755
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.5008	99.2225	67.7227	54.9332	8295	65	8615	4106	4035	98.2708
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.5008	99.2225	67.7227	54.9332	8295	65	8615	4106	4035	98.2708
raldana-dualsentieon	SNP	*	map_l125_m2_e1	*	99.1573	99.2225	99.0922	71.3931	46835	367	46829	429	15	3.4965
ckim-dragen	SNP	*	map_l150_m2_e1	homalt	99.4914	99.2221	99.7621	68.4589	11735	92	11740	28	25	89.2857
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e1	*	98.6694	99.2221	98.1229	87.5306	1148	9	1150	22	5	22.7273
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e0	het	97.8953	99.2218	96.6038	89.9048	510	4	512	18	3	16.6667
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	het	97.5224	99.2218	95.8801	89.6170	510	4	512	22	2	9.0909
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5825	99.2217	99.9459	39.6327	7394	58	7391	4	1	25.0000
hfeng-pmm1	SNP	tv	map_l100_m1_e0	het	99.4603	99.2216	99.7001	64.9458	15297	120	15293	46	12	26.0870
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5680	99.2210	99.9174	48.2147	2420	19	2420	2	0	0.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e1	het	98.3302	99.2208	97.4555	87.7969	764	6	766	20	3	15.0000
ciseli-custom	SNP	*	func_cds	het	97.0747	99.2205	95.0198	27.5142	11074	87	11047	579	4	0.6908
rpoplin-dv42	SNP	tv	map_l100_m1_e0	*	99.2751	99.2204	99.3298	64.0760	24310	191	24306	164	80	48.7805
hfeng-pmm2	SNP	tv	map_l125_m1_e0	het	98.9851	99.2198	98.7515	74.5484	10047	79	10045	127	11	8.6614
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8985	99.2195	98.5796	63.0301	15637	123	15477	223	202	90.5830
ckim-vqsr	INDEL	*	map_l100_m2_e1	homalt	99.2194	99.2194	99.2194	85.2079	1271	10	1271	10	5	50.0000
ckim-dragen	SNP	*	map_l150_m1_e0	homalt	99.4842	99.2194	99.7504	65.7675	11185	88	11190	28	25	89.2857
ckim-gatk	INDEL	*	map_l100_m2_e1	homalt	99.1806	99.2194	99.1420	85.1980	1271	10	1271	11	6	54.5455
jli-custom	INDEL	*	map_l100_m2_e1	homalt	99.1420	99.2194	99.0647	83.4066	1271	10	1271	12	6	50.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5585	99.2191	99.9003	37.7315	18041	142	18038	18	6	33.3333
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3283	99.2191	99.4377	37.1644	18041	142	18038	102	2	1.9608
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	96.5798	99.2191	94.0773	54.5022	18041	142	18092	1139	144	12.6427
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.9791	99.2182	98.7412	58.5355	2665	21	2667	34	4	11.7647
qzeng-custom	SNP	tv	*	*	99.4379	99.2180	99.6588	26.4392	962115	7583	958619	3282	549	16.7276
ckim-dragen	SNP	*	map_l100_m0_e0	homalt	99.4909	99.2169	99.7664	57.4442	11529	91	11532	27	24	88.8889
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
hfeng-pmm1	SNP	ti	map_l125_m2_e0	*	99.4583	99.2167	99.7011	70.4657	30021	237	30017	90	25	27.7778
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	82.5868	380	3	380	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	83.4131	380	3	380	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4783	380	3	380	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4206	380	3	380	0	0
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3248	99.2165	99.4333	71.0574	16842	133	16845	96	85	88.5417
bgallagher-sentieon	SNP	ti	map_l150_m1_e0	het	98.8799	99.2158	98.5462	78.5485	12273	97	12269	181	29	16.0221
hfeng-pmm3	SNP	ti	map_l150_m1_e0	het	99.3161	99.2158	99.4166	75.5923	12273	97	12269	72	8	11.1111
eyeh-varpipe	SNP	tv	map_l250_m0_e0	*	97.7391	99.2157	96.3057	94.5189	759	6	756	29	3	10.3448
ckim-dragen	SNP	*	map_l100_m1_e0	het	98.1047	99.2152	97.0189	72.1356	45003	356	45009	1383	119	8.6045
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	het	98.3172	99.2147	97.4359	87.7185	758	6	760	20	3	15.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5582	99.2146	99.9041	50.2607	14654	116	14581	14	6	42.8571
raldana-dualsentieon	SNP	*	map_l125_m2_e0	*	99.1550	99.2145	99.0956	71.3320	46356	367	46350	423	15	3.5461

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